Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23862 | 3' | -59.5 | NC_005262.1 | + | 42256 | 0.73 | 0.211972 |
Target: 5'- gCGCCgCGCUcacugcggcgaCGAGcGGCACGGGCAccGg -3' miRNA: 3'- -GCGGgGCGA-----------GCUU-CCGUGCCCGUuaC- -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 5176 | 0.72 | 0.228766 |
Target: 5'- aCGgCCgGCgUCGcGGGCGCGGGCGcgGc -3' miRNA: 3'- -GCgGGgCG-AGCuUCCGUGCCCGUuaC- -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 45970 | 0.71 | 0.252894 |
Target: 5'- -uUCCCGCUCGAGGGUugGGaCGAc- -3' miRNA: 3'- gcGGGGCGAGCUUCCGugCCcGUUac -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 48463 | 0.71 | 0.271667 |
Target: 5'- uGCCgCGCggaucgCGAgccgcguGGGCACGGGCGGc- -3' miRNA: 3'- gCGGgGCGa-----GCU-------UCCGUGCCCGUUac -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 57744 | 0.69 | 0.337805 |
Target: 5'- uCGUCaaggCGCUCGAGGGCauuGCGcGCAAUGg -3' miRNA: 3'- -GCGGg---GCGAGCUUCCG---UGCcCGUUAC- -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 4585 | 0.7 | 0.312541 |
Target: 5'- gGCgCUGCUCGGgcgugagcgcccgcAGGaACGGGCGGUGa -3' miRNA: 3'- gCGgGGCGAGCU--------------UCCgUGCCCGUUAC- -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 33930 | 0.7 | 0.307369 |
Target: 5'- uGCCgaGCUCGcggcGGGCACGcGGCAAg- -3' miRNA: 3'- gCGGggCGAGCu---UCCGUGC-CCGUUac -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 49410 | 0.7 | 0.292956 |
Target: 5'- uGgUCUGUUCGgcGGCAUGGGCGAc- -3' miRNA: 3'- gCgGGGCGAGCuuCCGUGCCCGUUac -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 10843 | 0.71 | 0.285256 |
Target: 5'- cCGCCgCGCUCaGggGGCggcaugagugaggGCGcGGUAAUGg -3' miRNA: 3'- -GCGGgGCGAG-CuuCCG-------------UGC-CCGUUAC- -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 56929 | 0.71 | 0.271667 |
Target: 5'- gGCCgCGCUCGAgaAGcgcacgccgauccGCGCGGGCGAg- -3' miRNA: 3'- gCGGgGCGAGCU--UC-------------CGUGCCCGUUac -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 55513 | 0.67 | 0.470313 |
Target: 5'- cCGCCUCGCgagCGA---CGCGGGCAGc- -3' miRNA: 3'- -GCGGGGCGa--GCUuccGUGCCCGUUac -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 54622 | 0.67 | 0.489939 |
Target: 5'- gCGCCgaCCGCcaugcgUGAAGGCGCcGGGUGAUc -3' miRNA: 3'- -GCGG--GGCGa-----GCUUCCGUG-CCCGUUAc -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 53018 | 0.66 | 0.499894 |
Target: 5'- aGCaguaCCGCgCGcccGGCGCGGGCGGa- -3' miRNA: 3'- gCGg---GGCGaGCuu-CCGUGCCCGUUac -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 5265 | 0.66 | 0.509938 |
Target: 5'- aCGCCUCGUgcagcaGCACGGGCAGg- -3' miRNA: 3'- -GCGGGGCGagcuucCGUGCCCGUUac -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 62811 | 0.66 | 0.509938 |
Target: 5'- cCGCCCCGCccgcgcaggUCGccacucGGCAgGGGCugacgGAUGa -3' miRNA: 3'- -GCGGGGCG---------AGCuu----CCGUgCCCG-----UUAC- -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 11747 | 0.66 | 0.520065 |
Target: 5'- -aCCCCGgaCUCGAuguAGGCGCcGGCGAUc -3' miRNA: 3'- gcGGGGC--GAGCU---UCCGUGcCCGUUAc -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 13442 | 0.66 | 0.53027 |
Target: 5'- uGCgCCGCUCGc-GGUcgucGCGGGCGc-- -3' miRNA: 3'- gCGgGGCGAGCuuCCG----UGCCCGUuac -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 41639 | 0.66 | 0.540548 |
Target: 5'- uCGCCuCCaGCUCGgcGauGCGGGCAGc- -3' miRNA: 3'- -GCGG-GG-CGAGCuuCcgUGCCCGUUac -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 13514 | 0.66 | 0.550891 |
Target: 5'- gGCCgUcacggGCUCGGccGGCGCGGGCGc-- -3' miRNA: 3'- gCGGgG-----CGAGCUu-CCGUGCCCGUuac -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 61901 | 1.09 | 0.000481 |
Target: 5'- cCGCCCCGCUCGAAGGCACGGGCAAUGg -3' miRNA: 3'- -GCGGGGCGAGCUUCCGUGCCCGUUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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