miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23862 3' -59.5 NC_005262.1 + 55016 0.69 0.345748
Target:  5'- -aCCUCGCgcacgCGGucGGCGCGGGCAAg- -3'
miRNA:   3'- gcGGGGCGa----GCUu-CCGUGCCCGUUac -5'
23862 3' -59.5 NC_005262.1 + 30256 0.68 0.396172
Target:  5'- aGCCa-GCUCGAcgaccugaacaAGGCcgaGCGGGCAAUc -3'
miRNA:   3'- gCGGggCGAGCU-----------UCCG---UGCCCGUUAc -5'
23862 3' -59.5 NC_005262.1 + 17269 0.68 0.396172
Target:  5'- gCGCCgCGCUgGGcugcuGCGCGGGCAggGg -3'
miRNA:   3'- -GCGGgGCGAgCUuc---CGUGCCCGUuaC- -5'
23862 3' -59.5 NC_005262.1 + 974 0.68 0.404134
Target:  5'- aGCCCCuGC-CGAguggcgaccugcgGGGCG-GGGCGGUGu -3'
miRNA:   3'- gCGGGG-CGaGCU-------------UCCGUgCCCGUUAC- -5'
23862 3' -59.5 NC_005262.1 + 11627 0.68 0.405025
Target:  5'- uGCCCCcugcaccaucgGCUCGgcGGCGCcGGCGu-- -3'
miRNA:   3'- gCGGGG-----------CGAGCuuCCGUGcCCGUuac -5'
23862 3' -59.5 NC_005262.1 + 5574 0.68 0.405025
Target:  5'- uGCCCaaGUUCGu-GGUACGGGCGGc- -3'
miRNA:   3'- gCGGGg-CGAGCuuCCGUGCCCGUUac -5'
23862 3' -59.5 NC_005262.1 + 8 0.68 0.414002
Target:  5'- aGCCCCGaCUCGcGAGaGC-CGgGGCAAUc -3'
miRNA:   3'- gCGGGGC-GAGC-UUC-CGuGC-CCGUUAc -5'
23862 3' -59.5 NC_005262.1 + 54023 0.68 0.420358
Target:  5'- gGCaaCCUGCUCGccuacagcaccaucGAGcGCACGGGCGAc- -3'
miRNA:   3'- gCG--GGGCGAGC--------------UUC-CGUGCCCGUUac -5'
23862 3' -59.5 NC_005262.1 + 8904 0.68 0.4231
Target:  5'- aCGgUCCGCUCuuGGGUGCGcGGCGAa- -3'
miRNA:   3'- -GCgGGGCGAGcuUCCGUGC-CCGUUac -5'
23862 3' -59.5 NC_005262.1 + 11092 0.68 0.432317
Target:  5'- gCGgCCCGCUgGcacgcuuGGCG-GGGCAAUGg -3'
miRNA:   3'- -GCgGGGCGAgCuu-----CCGUgCCCGUUAC- -5'
23862 3' -59.5 NC_005262.1 + 46980 0.67 0.441649
Target:  5'- uCGgCCUGUgggCGAAGGCAUGGcGCGc-- -3'
miRNA:   3'- -GCgGGGCGa--GCUUCCGUGCC-CGUuac -5'
23862 3' -59.5 NC_005262.1 + 8876 0.67 0.445414
Target:  5'- aCGCCCggcaGCgucaggugcgagccgUCGAAcuGGCGCGGcGCGAUGu -3'
miRNA:   3'- -GCGGGg---CG---------------AGCUU--CCGUGCC-CGUUAC- -5'
23862 3' -59.5 NC_005262.1 + 45448 0.67 0.451095
Target:  5'- gGCUCgGaaccaUCGccGGCGCGGGCAucAUGg -3'
miRNA:   3'- gCGGGgCg----AGCuuCCGUGCCCGU--UAC- -5'
23862 3' -59.5 NC_005262.1 + 23069 0.67 0.460651
Target:  5'- cCGCCCgUGCUCGAGGGCgucaGCGccgccguauuauGGCcGUGc -3'
miRNA:   3'- -GCGGG-GCGAGCUUCCG----UGC------------CCGuUAC- -5'
23862 3' -59.5 NC_005262.1 + 27386 0.67 0.460651
Target:  5'- gCGCCuCCGCgaacgUGGAcuucGGCgACGGGCGAa- -3'
miRNA:   3'- -GCGG-GGCGa----GCUU----CCG-UGCCCGUUac -5'
23862 3' -59.5 NC_005262.1 + 46810 0.67 0.470313
Target:  5'- gCGCUCgGC-CGgcGGCAgcaGGGCAAUa -3'
miRNA:   3'- -GCGGGgCGaGCuuCCGUg--CCCGUUAc -5'
23862 3' -59.5 NC_005262.1 + 55513 0.67 0.470313
Target:  5'- cCGCCUCGCgagCGA---CGCGGGCAGc- -3'
miRNA:   3'- -GCGGGGCGa--GCUuccGUGCCCGUUac -5'
23862 3' -59.5 NC_005262.1 + 36267 0.67 0.470313
Target:  5'- uCGCCCuCG-UCGguGcGCGCGGGCAc-- -3'
miRNA:   3'- -GCGGG-GCgAGCuuC-CGUGCCCGUuac -5'
23862 3' -59.5 NC_005262.1 + 31997 0.67 0.480077
Target:  5'- gGCCCCGCUCGucaucgagAAGGCcguggaaaaGGccGCGAUGa -3'
miRNA:   3'- gCGGGGCGAGC--------UUCCGug-------CC--CGUUAC- -5'
23862 3' -59.5 NC_005262.1 + 59968 0.67 0.480077
Target:  5'- uCG-CCCGCUCGAucAGGCGCGcauGCAc-- -3'
miRNA:   3'- -GCgGGGCGAGCU--UCCGUGCc--CGUuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.