miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23862 3' -59.5 NC_005262.1 + 45448 0.67 0.451095
Target:  5'- gGCUCgGaaccaUCGccGGCGCGGGCAucAUGg -3'
miRNA:   3'- gCGGGgCg----AGCuuCCGUGCCCGU--UAC- -5'
23862 3' -59.5 NC_005262.1 + 8876 0.67 0.445414
Target:  5'- aCGCCCggcaGCgucaggugcgagccgUCGAAcuGGCGCGGcGCGAUGu -3'
miRNA:   3'- -GCGGGg---CG---------------AGCUU--CCGUGCC-CGUUAC- -5'
23862 3' -59.5 NC_005262.1 + 46980 0.67 0.441649
Target:  5'- uCGgCCUGUgggCGAAGGCAUGGcGCGc-- -3'
miRNA:   3'- -GCgGGGCGa--GCUUCCGUGCC-CGUuac -5'
23862 3' -59.5 NC_005262.1 + 11092 0.68 0.432317
Target:  5'- gCGgCCCGCUgGcacgcuuGGCG-GGGCAAUGg -3'
miRNA:   3'- -GCgGGGCGAgCuu-----CCGUgCCCGUUAC- -5'
23862 3' -59.5 NC_005262.1 + 8904 0.68 0.4231
Target:  5'- aCGgUCCGCUCuuGGGUGCGcGGCGAa- -3'
miRNA:   3'- -GCgGGGCGAGcuUCCGUGC-CCGUUac -5'
23862 3' -59.5 NC_005262.1 + 54023 0.68 0.420358
Target:  5'- gGCaaCCUGCUCGccuacagcaccaucGAGcGCACGGGCGAc- -3'
miRNA:   3'- gCG--GGGCGAGC--------------UUC-CGUGCCCGUUac -5'
23862 3' -59.5 NC_005262.1 + 8 0.68 0.414002
Target:  5'- aGCCCCGaCUCGcGAGaGC-CGgGGCAAUc -3'
miRNA:   3'- gCGGGGC-GAGC-UUC-CGuGC-CCGUUAc -5'
23862 3' -59.5 NC_005262.1 + 11627 0.68 0.405025
Target:  5'- uGCCCCcugcaccaucgGCUCGgcGGCGCcGGCGu-- -3'
miRNA:   3'- gCGGGG-----------CGAGCuuCCGUGcCCGUuac -5'
23862 3' -59.5 NC_005262.1 + 5574 0.68 0.405025
Target:  5'- uGCCCaaGUUCGu-GGUACGGGCGGc- -3'
miRNA:   3'- gCGGGg-CGAGCuuCCGUGCCCGUUac -5'
23862 3' -59.5 NC_005262.1 + 974 0.68 0.404134
Target:  5'- aGCCCCuGC-CGAguggcgaccugcgGGGCG-GGGCGGUGu -3'
miRNA:   3'- gCGGGG-CGaGCU-------------UCCGUgCCCGUUAC- -5'
23862 3' -59.5 NC_005262.1 + 17269 0.68 0.396172
Target:  5'- gCGCCgCGCUgGGcugcuGCGCGGGCAggGg -3'
miRNA:   3'- -GCGGgGCGAgCUuc---CGUGCCCGUuaC- -5'
23862 3' -59.5 NC_005262.1 + 30256 0.68 0.396172
Target:  5'- aGCCa-GCUCGAcgaccugaacaAGGCcgaGCGGGCAAUc -3'
miRNA:   3'- gCGGggCGAGCU-----------UCCG---UGCCCGUUAc -5'
23862 3' -59.5 NC_005262.1 + 29032 0.69 0.345748
Target:  5'- cCGCCgaGCUCGAGcGGCGCcGGCAc-- -3'
miRNA:   3'- -GCGGggCGAGCUU-CCGUGcCCGUuac -5'
23862 3' -59.5 NC_005262.1 + 55016 0.69 0.345748
Target:  5'- -aCCUCGCgcacgCGGucGGCGCGGGCAAg- -3'
miRNA:   3'- gcGGGGCGa----GCUu-CCGUGCCCGUUac -5'
23862 3' -59.5 NC_005262.1 + 57744 0.69 0.337805
Target:  5'- uCGUCaaggCGCUCGAGGGCauuGCGcGCAAUGg -3'
miRNA:   3'- -GCGGg---GCGAGCUUCCG---UGCcCGUUAC- -5'
23862 3' -59.5 NC_005262.1 + 1757 0.7 0.314777
Target:  5'- uGCgCCGCaUCGAGGaggaggaucGCGCGcGGCGAUGa -3'
miRNA:   3'- gCGgGGCG-AGCUUC---------CGUGC-CCGUUAC- -5'
23862 3' -59.5 NC_005262.1 + 4585 0.7 0.312541
Target:  5'- gGCgCUGCUCGGgcgugagcgcccgcAGGaACGGGCGGUGa -3'
miRNA:   3'- gCGgGGCGAGCU--------------UCCgUGCCCGUUAC- -5'
23862 3' -59.5 NC_005262.1 + 33930 0.7 0.307369
Target:  5'- uGCCgaGCUCGcggcGGGCACGcGGCAAg- -3'
miRNA:   3'- gCGGggCGAGCu---UCCGUGC-CCGUUac -5'
23862 3' -59.5 NC_005262.1 + 895 0.7 0.300096
Target:  5'- gCGCgCCaGCUCGucGGCgcgcugGCGGGUGAUGg -3'
miRNA:   3'- -GCGgGG-CGAGCuuCCG------UGCCCGUUAC- -5'
23862 3' -59.5 NC_005262.1 + 49410 0.7 0.292956
Target:  5'- uGgUCUGUUCGgcGGCAUGGGCGAc- -3'
miRNA:   3'- gCgGGGCGAGCuuCCGUGCCCGUUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.