miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23863 5' -57.8 NC_005262.1 + 10778 0.67 0.484835
Target:  5'- cCCGC-GCCGggcGCGCGGUAcugcugcgcgagcUGCCGCGa -3'
miRNA:   3'- uGGUGaCGGU---UGUGCCGU-------------ACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 43832 0.69 0.372061
Target:  5'- gGCCGCggGCCGgccgcGCGCGGCGgugcGCCgGCAg -3'
miRNA:   3'- -UGGUGa-CGGU-----UGUGCCGUa---CGG-CGUa -5'
23863 5' -57.8 NC_005262.1 + 23350 0.69 0.380834
Target:  5'- gACCACgGCCGgcgugaagcGCGCGGCGgcgaagGcCCGCAa -3'
miRNA:   3'- -UGGUGaCGGU---------UGUGCCGUa-----C-GGCGUa -5'
23863 5' -57.8 NC_005262.1 + 51529 0.68 0.417276
Target:  5'- gACCG-UGCgCAACACGGCGaccgGCuCGCGUa -3'
miRNA:   3'- -UGGUgACG-GUUGUGCCGUa---CG-GCGUA- -5'
23863 5' -57.8 NC_005262.1 + 10534 0.68 0.417276
Target:  5'- gGCCGaaacggcuaUGCCGACGCGaCcgGCCGCGc -3'
miRNA:   3'- -UGGUg--------ACGGUUGUGCcGuaCGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 1977 0.68 0.426713
Target:  5'- uGCgGCaUGCCGuguugGCAUGGUGUGCuCGCAUg -3'
miRNA:   3'- -UGgUG-ACGGU-----UGUGCCGUACG-GCGUA- -5'
23863 5' -57.8 NC_005262.1 + 209 0.67 0.465686
Target:  5'- uCCGCaGCgCGcGCACGaGCAUGCCGUAc -3'
miRNA:   3'- uGGUGaCG-GU-UGUGC-CGUACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 63274 0.67 0.465686
Target:  5'- aGCCGCcGCCuGCuugACGGCcgGCUGCu- -3'
miRNA:   3'- -UGGUGaCGGuUG---UGCCGuaCGGCGua -5'
23863 5' -57.8 NC_005262.1 + 46580 0.67 0.475716
Target:  5'- gACCACgacGCCAGCGCcGUccucGCCGCAg -3'
miRNA:   3'- -UGGUGa--CGGUUGUGcCGua--CGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 50866 0.69 0.372061
Target:  5'- uGCCGCaggUGCCGacgcaaucGCACGGCGcGCCGuCAa -3'
miRNA:   3'- -UGGUG---ACGGU--------UGUGCCGUaCGGC-GUa -5'
23863 5' -57.8 NC_005262.1 + 46519 0.69 0.371192
Target:  5'- cGCCcCUGCCcgcgcagcagcccAGCGCGGCGccgGCCGCc- -3'
miRNA:   3'- -UGGuGACGG-------------UUGUGCCGUa--CGGCGua -5'
23863 5' -57.8 NC_005262.1 + 14167 0.69 0.363427
Target:  5'- cGCCGC-GCCGAggagUGCGGCAaGCCGCu- -3'
miRNA:   3'- -UGGUGaCGGUU----GUGCCGUaCGGCGua -5'
23863 5' -57.8 NC_005262.1 + 17083 0.73 0.220366
Target:  5'- gGCgCGCccGUCGACGCGGCggGCCGCGa -3'
miRNA:   3'- -UG-GUGa-CGGUUGUGCCGuaCGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 30626 0.72 0.264087
Target:  5'- aGCCGCcGCCGACGCucGGCAaggUGcCCGCGUc -3'
miRNA:   3'- -UGGUGaCGGUUGUG--CCGU---AC-GGCGUA- -5'
23863 5' -57.8 NC_005262.1 + 29633 0.71 0.292095
Target:  5'- cGCCGCaaCCGGCaucggcagcgaGCGGCAUGCCGCc- -3'
miRNA:   3'- -UGGUGacGGUUG-----------UGCCGUACGGCGua -5'
23863 5' -57.8 NC_005262.1 + 42623 0.7 0.314589
Target:  5'- cUCGCUGCCGA-ACGGCAUgaugGCCGCc- -3'
miRNA:   3'- uGGUGACGGUUgUGCCGUA----CGGCGua -5'
23863 5' -57.8 NC_005262.1 + 45102 0.7 0.322373
Target:  5'- gACCGC-GCuCAACuCGGCGggUGCCGCGa -3'
miRNA:   3'- -UGGUGaCG-GUUGuGCCGU--ACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 52702 0.7 0.322373
Target:  5'- gGCCGCcgGCCGACGcCGGacgagGCCGCGc -3'
miRNA:   3'- -UGGUGa-CGGUUGU-GCCgua--CGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 24469 0.69 0.362571
Target:  5'- -gCGCUGCaCGGCACGaGCGucgcgcuUGCCGCGa -3'
miRNA:   3'- ugGUGACG-GUUGUGC-CGU-------ACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 2759 0.69 0.363427
Target:  5'- -gCGCU-UCAGCACGGCGgcgggUGCCGCAUc -3'
miRNA:   3'- ugGUGAcGGUUGUGCCGU-----ACGGCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.