Results 1 - 20 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23863 | 5' | -57.8 | NC_005262.1 | + | 209 | 0.67 | 0.465686 |
Target: 5'- uCCGCaGCgCGcGCACGaGCAUGCCGUAc -3' miRNA: 3'- uGGUGaCG-GU-UGUGC-CGUACGGCGUa -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 1137 | 0.66 | 0.537951 |
Target: 5'- gGCCGCUGCgGGCuuCGauGC-UGCCGCGc -3' miRNA: 3'- -UGGUGACGgUUGu-GC--CGuACGGCGUa -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 1977 | 0.68 | 0.426713 |
Target: 5'- uGCgGCaUGCCGuguugGCAUGGUGUGCuCGCAUg -3' miRNA: 3'- -UGgUG-ACGGU-----UGUGCCGUACG-GCGUA- -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 2759 | 0.69 | 0.363427 |
Target: 5'- -gCGCU-UCAGCACGGCGgcgggUGCCGCAUc -3' miRNA: 3'- ugGUGAcGGUUGUGCCGU-----ACGGCGUA- -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 3170 | 0.71 | 0.284882 |
Target: 5'- cGCCGCUcGCCAgcgugcGCAUGGCGUucGCCGUg- -3' miRNA: 3'- -UGGUGA-CGGU------UGUGCCGUA--CGGCGua -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 3626 | 0.67 | 0.495063 |
Target: 5'- cCCACUgGCCGAgcgccuuCACGGCG-GCCGgGUa -3' miRNA: 3'- uGGUGA-CGGUU-------GUGCCGUaCGGCgUA- -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 5081 | 0.74 | 0.198259 |
Target: 5'- uCCGCgGUCAGCGCcucgGGCAUGCCGCc- -3' miRNA: 3'- uGGUGaCGGUUGUG----CCGUACGGCGua -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 6488 | 0.67 | 0.474709 |
Target: 5'- uGCCGauCUGCuCGAUGCGGCGcucguucUGCUGCAc -3' miRNA: 3'- -UGGU--GACG-GUUGUGCCGU-------ACGGCGUa -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 10085 | 0.66 | 0.570123 |
Target: 5'- cGCCACgGCCuucGACGCGGCcgGguuCUGCGc -3' miRNA: 3'- -UGGUGaCGG---UUGUGCCGuaC---GGCGUa -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 10507 | 0.68 | 0.416339 |
Target: 5'- uGCCcUUGCUggugacgAACACGaGCAUGCCGCc- -3' miRNA: 3'- -UGGuGACGG-------UUGUGC-CGUACGGCGua -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 10534 | 0.68 | 0.417276 |
Target: 5'- gGCCGaaacggcuaUGCCGACGCGaCcgGCCGCGc -3' miRNA: 3'- -UGGUg--------ACGGUUGUGCcGuaCGGCGUa -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 10778 | 0.67 | 0.484835 |
Target: 5'- cCCGC-GCCGggcGCGCGGUAcugcugcgcgagcUGCCGCGa -3' miRNA: 3'- uGGUGaCGGU---UGUGCCGU-------------ACGGCGUa -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 12445 | 0.66 | 0.580958 |
Target: 5'- gGCgCGgUGCCGagcuGCAUGGCGgauucgaucuUGCCGCGc -3' miRNA: 3'- -UG-GUgACGGU----UGUGCCGU----------ACGGCGUa -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 14167 | 0.69 | 0.363427 |
Target: 5'- cGCCGC-GCCGAggagUGCGGCAaGCCGCu- -3' miRNA: 3'- -UGGUGaCGGUU----GUGCCGUaCGGCGua -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 14632 | 0.71 | 0.27781 |
Target: 5'- cGCCGCUgcgGCCGAUGCGGCcUGCaCGCc- -3' miRNA: 3'- -UGGUGA---CGGUUGUGCCGuACG-GCGua -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 15754 | 0.69 | 0.380834 |
Target: 5'- gACgCGCuUGCgGGCGCGGCcgGCUGCu- -3' miRNA: 3'- -UG-GUG-ACGgUUGUGCCGuaCGGCGua -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 16482 | 0.67 | 0.496091 |
Target: 5'- cCCGCUGCCGgacgaGCugGGCGaGgCGCu- -3' miRNA: 3'- uGGUGACGGU-----UGugCCGUaCgGCGua -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 17083 | 0.73 | 0.220366 |
Target: 5'- gGCgCGCccGUCGACGCGGCggGCCGCGa -3' miRNA: 3'- -UG-GUGa-CGGUUGUGCCGuaCGGCGUa -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 17100 | 0.69 | 0.372061 |
Target: 5'- uCCACUGCgcGCGCGGCGcUGaCUGCAUc -3' miRNA: 3'- uGGUGACGguUGUGCCGU-AC-GGCGUA- -5' |
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23863 | 5' | -57.8 | NC_005262.1 | + | 17328 | 0.66 | 0.563646 |
Target: 5'- gGCUGCgucgugGCCGGCGCGGCAUucggguccggcgcggGCgGCGc -3' miRNA: 3'- -UGGUGa-----CGGUUGUGCCGUA---------------CGgCGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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