miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23863 5' -57.8 NC_005262.1 + 18080 0.69 0.398789
Target:  5'- uGCCgaACUGCuCGAuCACGGCcgGCUGCc- -3'
miRNA:   3'- -UGG--UGACG-GUU-GUGCCGuaCGGCGua -5'
23863 5' -57.8 NC_005262.1 + 18805 0.69 0.389744
Target:  5'- cGCCGcCUGCC-GCGCGGacUGCUGCAc -3'
miRNA:   3'- -UGGU-GACGGuUGUGCCguACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 19101 0.66 0.537951
Target:  5'- aGCCAC-GCCGucaccaACGGCuUGUCGCGg -3'
miRNA:   3'- -UGGUGaCGGUug----UGCCGuACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 19958 0.75 0.159801
Target:  5'- gGCCACcGCCGcGCGCGGCcgGcCCGCGg -3'
miRNA:   3'- -UGGUGaCGGU-UGUGCCGuaC-GGCGUa -5'
23863 5' -57.8 NC_005262.1 + 22124 0.66 0.579872
Target:  5'- uGCCGgUGCCGGCggcgaugACGGC--GCCGCc- -3'
miRNA:   3'- -UGGUgACGGUUG-------UGCCGuaCGGCGua -5'
23863 5' -57.8 NC_005262.1 + 22234 0.66 0.527362
Target:  5'- gGCCGCgccGCCcACGcCGGCcgGCCuGCGc -3'
miRNA:   3'- -UGGUGa--CGGuUGU-GCCGuaCGG-CGUa -5'
23863 5' -57.8 NC_005262.1 + 22930 0.7 0.314589
Target:  5'- uGCCGCUGCCGGCAUuuuGCGUGCuaugcccgucccCGCAc -3'
miRNA:   3'- -UGGUGACGGUUGUGc--CGUACG------------GCGUa -5'
23863 5' -57.8 NC_005262.1 + 23350 0.69 0.380834
Target:  5'- gACCACgGCCGgcgugaagcGCGCGGCGgcgaagGcCCGCAa -3'
miRNA:   3'- -UGGUGaCGGU---------UGUGCCGUa-----C-GGCGUa -5'
23863 5' -57.8 NC_005262.1 + 23409 0.67 0.465686
Target:  5'- uCCGC-GCgAACGCGGCAgacagGCCGUc- -3'
miRNA:   3'- uGGUGaCGgUUGUGCCGUa----CGGCGua -5'
23863 5' -57.8 NC_005262.1 + 24195 0.66 0.580958
Target:  5'- uUCAC-GcCCGAgGCGGCA-GCCGCGa -3'
miRNA:   3'- uGGUGaC-GGUUgUGCCGUaCGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 24469 0.69 0.362571
Target:  5'- -gCGCUGCaCGGCACGaGCGucgcgcuUGCCGCGa -3'
miRNA:   3'- ugGUGACG-GUUGUGC-CGU-------ACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 26984 0.67 0.475716
Target:  5'- aACCGC-GCCAGuCACGGCcguUGCagcaGCAUc -3'
miRNA:   3'- -UGGUGaCGGUU-GUGCCGu--ACGg---CGUA- -5'
23863 5' -57.8 NC_005262.1 + 27155 0.66 0.527362
Target:  5'- uACUGgUGCCGGCACa-CcgGCCGCAUg -3'
miRNA:   3'- -UGGUgACGGUUGUGccGuaCGGCGUA- -5'
23863 5' -57.8 NC_005262.1 + 27382 0.67 0.491984
Target:  5'- uGCCAUccagcgaUGCCGGCACagguugaaugucggGGUucaGUGCCGCAUu -3'
miRNA:   3'- -UGGUG-------ACGGUUGUG--------------CCG---UACGGCGUA- -5'
23863 5' -57.8 NC_005262.1 + 29633 0.71 0.292095
Target:  5'- cGCCGCaaCCGGCaucggcagcgaGCGGCAUGCCGCc- -3'
miRNA:   3'- -UGGUGacGGUUG-----------UGCCGUACGGCGua -5'
23863 5' -57.8 NC_005262.1 + 30134 0.66 0.527362
Target:  5'- uGCCGCUGCUggucgccgaAGCGcCGGCGgaUGCCGaCGc -3'
miRNA:   3'- -UGGUGACGG---------UUGU-GCCGU--ACGGC-GUa -5'
23863 5' -57.8 NC_005262.1 + 30433 0.7 0.321588
Target:  5'- gAUCACgGCCGGCggguugucgaucgGCGGCAcggUGCCGCGc -3'
miRNA:   3'- -UGGUGaCGGUUG-------------UGCCGU---ACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 30626 0.72 0.264087
Target:  5'- aGCCGCcGCCGACGCucGGCAaggUGcCCGCGUc -3'
miRNA:   3'- -UGGUGaCGGUUGUG--CCGU---AC-GGCGUA- -5'
23863 5' -57.8 NC_005262.1 + 34136 0.69 0.380834
Target:  5'- gGCUGC-GCgGGCgcggGCGGCAUGCCGCu- -3'
miRNA:   3'- -UGGUGaCGgUUG----UGCCGUACGGCGua -5'
23863 5' -57.8 NC_005262.1 + 34163 0.67 0.485853
Target:  5'- cUCGCUGCCGAUGCcGguUGCgGCGUg -3'
miRNA:   3'- uGGUGACGGUUGUGcCguACGgCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.