miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23863 5' -57.8 NC_005262.1 + 43832 0.69 0.372061
Target:  5'- gGCCGCggGCCGgccgcGCGCGGCGgugcGCCgGCAg -3'
miRNA:   3'- -UGGUGa-CGGU-----UGUGCCGUa---CGG-CGUa -5'
23863 5' -57.8 NC_005262.1 + 50866 0.69 0.372061
Target:  5'- uGCCGCaggUGCCGacgcaaucGCACGGCGcGCCGuCAa -3'
miRNA:   3'- -UGGUG---ACGGU--------UGUGCCGUaCGGC-GUa -5'
23863 5' -57.8 NC_005262.1 + 17100 0.69 0.372061
Target:  5'- uCCACUGCgcGCGCGGCGcUGaCUGCAUc -3'
miRNA:   3'- uGGUGACGguUGUGCCGU-AC-GGCGUA- -5'
23863 5' -57.8 NC_005262.1 + 34136 0.69 0.380834
Target:  5'- gGCUGC-GCgGGCgcggGCGGCAUGCCGCu- -3'
miRNA:   3'- -UGGUGaCGgUUG----UGCCGUACGGCGua -5'
23863 5' -57.8 NC_005262.1 + 23350 0.69 0.380834
Target:  5'- gACCACgGCCGgcgugaagcGCGCGGCGgcgaagGcCCGCAa -3'
miRNA:   3'- -UGGUGaCGGU---------UGUGCCGUa-----C-GGCGUa -5'
23863 5' -57.8 NC_005262.1 + 15754 0.69 0.380834
Target:  5'- gACgCGCuUGCgGGCGCGGCcgGCUGCu- -3'
miRNA:   3'- -UG-GUG-ACGgUUGUGCCGuaCGGCGua -5'
23863 5' -57.8 NC_005262.1 + 18805 0.69 0.389744
Target:  5'- cGCCGcCUGCC-GCGCGGacUGCUGCAc -3'
miRNA:   3'- -UGGU-GACGGuUGUGCCguACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 18080 0.69 0.398789
Target:  5'- uGCCgaACUGCuCGAuCACGGCcgGCUGCc- -3'
miRNA:   3'- -UGG--UGACG-GUU-GUGCCGuaCGGCGua -5'
23863 5' -57.8 NC_005262.1 + 53331 0.69 0.398789
Target:  5'- cGCCGCUGUCGuCGCGGCuu-CCGCc- -3'
miRNA:   3'- -UGGUGACGGUuGUGCCGuacGGCGua -5'
23863 5' -57.8 NC_005262.1 + 10507 0.68 0.416339
Target:  5'- uGCCcUUGCUggugacgAACACGaGCAUGCCGCc- -3'
miRNA:   3'- -UGGuGACGG-------UUGUGC-CGUACGGCGua -5'
23863 5' -57.8 NC_005262.1 + 10534 0.68 0.417276
Target:  5'- gGCCGaaacggcuaUGCCGACGCGaCcgGCCGCGc -3'
miRNA:   3'- -UGGUg--------ACGGUUGUGCcGuaCGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 51529 0.68 0.417276
Target:  5'- gACCG-UGCgCAACACGGCGaccgGCuCGCGUa -3'
miRNA:   3'- -UGGUgACG-GUUGUGCCGUa---CG-GCGUA- -5'
23863 5' -57.8 NC_005262.1 + 50052 0.68 0.426713
Target:  5'- cCCGCgaggcugaaUGCCuGGCACGGCGUGCCa--- -3'
miRNA:   3'- uGGUG---------ACGG-UUGUGCCGUACGGcgua -5'
23863 5' -57.8 NC_005262.1 + 1977 0.68 0.426713
Target:  5'- uGCgGCaUGCCGuguugGCAUGGUGUGCuCGCAUg -3'
miRNA:   3'- -UGgUG-ACGGU-----UGUGCCGUACG-GCGUA- -5'
23863 5' -57.8 NC_005262.1 + 23409 0.67 0.465686
Target:  5'- uCCGC-GCgAACGCGGCAgacagGCCGUc- -3'
miRNA:   3'- uGGUGaCGgUUGUGCCGUa----CGGCGua -5'
23863 5' -57.8 NC_005262.1 + 209 0.67 0.465686
Target:  5'- uCCGCaGCgCGcGCACGaGCAUGCCGUAc -3'
miRNA:   3'- uGGUGaCG-GU-UGUGC-CGUACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 63274 0.67 0.465686
Target:  5'- aGCCGCcGCCuGCuugACGGCcgGCUGCu- -3'
miRNA:   3'- -UGGUGaCGGuUG---UGCCGuaCGGCGua -5'
23863 5' -57.8 NC_005262.1 + 52226 0.67 0.465686
Target:  5'- gGCCGCcGCCGGCAUaGCA-GCgCGCGUg -3'
miRNA:   3'- -UGGUGaCGGUUGUGcCGUaCG-GCGUA- -5'
23863 5' -57.8 NC_005262.1 + 57729 0.67 0.474709
Target:  5'- gGCCGCgGCCuGACgcaaccccgugguGCGGUaucGUGCCGCAc -3'
miRNA:   3'- -UGGUGaCGG-UUG-------------UGCCG---UACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 6488 0.67 0.474709
Target:  5'- uGCCGauCUGCuCGAUGCGGCGcucguucUGCUGCAc -3'
miRNA:   3'- -UGGU--GACG-GUUGUGCCGU-------ACGGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.