miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23863 5' -57.8 NC_005262.1 + 49782 0.66 0.5242
Target:  5'- gGCCGCUGCCGcgccggacgccccuGCAccgucCGGCccgaucgGCCGCGc -3'
miRNA:   3'- -UGGUGACGGU--------------UGU-----GCCGua-----CGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 38951 0.67 0.516852
Target:  5'- -gCACUGgcgcagggugaUCGGCACGGCGccgGCCGCGa -3'
miRNA:   3'- ugGUGAC-----------GGUUGUGCCGUa--CGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 35750 0.67 0.506426
Target:  5'- cACUACgGCCAAgGCGGCAUuuucguucacccGCgCGCGa -3'
miRNA:   3'- -UGGUGaCGGUUgUGCCGUA------------CG-GCGUa -5'
23863 5' -57.8 NC_005262.1 + 44688 0.67 0.506426
Target:  5'- gACCGCgacaaGCCguugGugACGGCGUGgCUGCAUc -3'
miRNA:   3'- -UGGUGa----CGG----UugUGCCGUAC-GGCGUA- -5'
23863 5' -57.8 NC_005262.1 + 46690 0.67 0.506426
Target:  5'- cGCCGCgcgGUgGACcuccucGCGGCccGCCGCGUc -3'
miRNA:   3'- -UGGUGa--CGgUUG------UGCCGuaCGGCGUA- -5'
23863 5' -57.8 NC_005262.1 + 51468 0.67 0.496091
Target:  5'- uGCCGCcGCgCGcUGCGGCAcgaGCCGCAUg -3'
miRNA:   3'- -UGGUGaCG-GUuGUGCCGUa--CGGCGUA- -5'
23863 5' -57.8 NC_005262.1 + 16482 0.67 0.496091
Target:  5'- cCCGCUGCCGgacgaGCugGGCGaGgCGCu- -3'
miRNA:   3'- uGGUGACGGU-----UGugCCGUaCgGCGua -5'
23863 5' -57.8 NC_005262.1 + 3626 0.67 0.495063
Target:  5'- cCCACUgGCCGAgcgccuuCACGGCG-GCCGgGUa -3'
miRNA:   3'- uGGUGA-CGGUU-------GUGCCGUaCGGCgUA- -5'
23863 5' -57.8 NC_005262.1 + 27382 0.67 0.491984
Target:  5'- uGCCAUccagcgaUGCCGGCACagguugaaugucggGGUucaGUGCCGCAUu -3'
miRNA:   3'- -UGGUG-------ACGGUUGUG--------------CCG---UACGGCGUA- -5'
23863 5' -57.8 NC_005262.1 + 34163 0.67 0.485853
Target:  5'- cUCGCUGCCGAUGCcGguUGCgGCGUg -3'
miRNA:   3'- uGGUGACGGUUGUGcCguACGgCGUA- -5'
23863 5' -57.8 NC_005262.1 + 43055 0.67 0.485853
Target:  5'- gACC-CgGCCGGCACcGCGcGCCGCGg -3'
miRNA:   3'- -UGGuGaCGGUUGUGcCGUaCGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 43331 0.67 0.485853
Target:  5'- cGCCGCUcugcggaacaGCCcACGCGGCgacgGUGCCGgAa -3'
miRNA:   3'- -UGGUGA----------CGGuUGUGCCG----UACGGCgUa -5'
23863 5' -57.8 NC_005262.1 + 10778 0.67 0.484835
Target:  5'- cCCGC-GCCGggcGCGCGGUAcugcugcgcgagcUGCCGCGa -3'
miRNA:   3'- uGGUGaCGGU---UGUGCCGU-------------ACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 46580 0.67 0.475716
Target:  5'- gACCACgacGCCAGCGCcGUccucGCCGCAg -3'
miRNA:   3'- -UGGUGa--CGGUUGUGcCGua--CGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 26984 0.67 0.475716
Target:  5'- aACCGC-GCCAGuCACGGCcguUGCagcaGCAUc -3'
miRNA:   3'- -UGGUGaCGGUU-GUGCCGu--ACGg---CGUA- -5'
23863 5' -57.8 NC_005262.1 + 6488 0.67 0.474709
Target:  5'- uGCCGauCUGCuCGAUGCGGCGcucguucUGCUGCAc -3'
miRNA:   3'- -UGGU--GACG-GUUGUGCCGU-------ACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 57729 0.67 0.474709
Target:  5'- gGCCGCgGCCuGACgcaaccccgugguGCGGUaucGUGCCGCAc -3'
miRNA:   3'- -UGGUGaCGG-UUG-------------UGCCG---UACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 52226 0.67 0.465686
Target:  5'- gGCCGCcGCCGGCAUaGCA-GCgCGCGUg -3'
miRNA:   3'- -UGGUGaCGGUUGUGcCGUaCG-GCGUA- -5'
23863 5' -57.8 NC_005262.1 + 209 0.67 0.465686
Target:  5'- uCCGCaGCgCGcGCACGaGCAUGCCGUAc -3'
miRNA:   3'- uGGUGaCG-GU-UGUGC-CGUACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 63274 0.67 0.465686
Target:  5'- aGCCGCcGCCuGCuugACGGCcgGCUGCu- -3'
miRNA:   3'- -UGGUGaCGGuUG---UGCCGuaCGGCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.