miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23863 5' -57.8 NC_005262.1 + 61819 1.05 0.001068
Target:  5'- cACCACUGCCAACACGGCAUGCCGCAUc -3'
miRNA:   3'- -UGGUGACGGUUGUGCCGUACGGCGUA- -5'
23863 5' -57.8 NC_005262.1 + 19958 0.75 0.159801
Target:  5'- gGCCACcGCCGcGCGCGGCcgGcCCGCGg -3'
miRNA:   3'- -UGGUGaCGGU-UGUGCCGuaC-GGCGUa -5'
23863 5' -57.8 NC_005262.1 + 5081 0.74 0.198259
Target:  5'- uCCGCgGUCAGCGCcucgGGCAUGCCGCc- -3'
miRNA:   3'- uGGUGaCGGUUGUG----CCGUACGGCGua -5'
23863 5' -57.8 NC_005262.1 + 41677 0.73 0.21465
Target:  5'- cAUCGCcGCCGGCAcCGGCAucggcaucuaUGCCGCAg -3'
miRNA:   3'- -UGGUGaCGGUUGU-GCCGU----------ACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 17083 0.73 0.220366
Target:  5'- gGCgCGCccGUCGACGCGGCggGCCGCGa -3'
miRNA:   3'- -UG-GUGa-CGGUUGUGCCGuaCGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 30626 0.72 0.264087
Target:  5'- aGCCGCcGCCGACGCucGGCAaggUGcCCGCGUc -3'
miRNA:   3'- -UGGUGaCGGUUGUG--CCGU---AC-GGCGUA- -5'
23863 5' -57.8 NC_005262.1 + 14632 0.71 0.27781
Target:  5'- cGCCGCUgcgGCCGAUGCGGCcUGCaCGCc- -3'
miRNA:   3'- -UGGUGA---CGGUUGUGCCGuACG-GCGua -5'
23863 5' -57.8 NC_005262.1 + 3170 0.71 0.284882
Target:  5'- cGCCGCUcGCCAgcgugcGCAUGGCGUucGCCGUg- -3'
miRNA:   3'- -UGGUGA-CGGU------UGUGCCGUA--CGGCGua -5'
23863 5' -57.8 NC_005262.1 + 29633 0.71 0.292095
Target:  5'- cGCCGCaaCCGGCaucggcagcgaGCGGCAUGCCGCc- -3'
miRNA:   3'- -UGGUGacGGUUG-----------UGCCGUACGGCGua -5'
23863 5' -57.8 NC_005262.1 + 53243 0.71 0.306949
Target:  5'- uGCgGCUGC--GCGCGGCcgGUCGCGUc -3'
miRNA:   3'- -UGgUGACGguUGUGCCGuaCGGCGUA- -5'
23863 5' -57.8 NC_005262.1 + 42623 0.7 0.314589
Target:  5'- cUCGCUGCCGA-ACGGCAUgaugGCCGCc- -3'
miRNA:   3'- uGGUGACGGUUgUGCCGUA----CGGCGua -5'
23863 5' -57.8 NC_005262.1 + 22930 0.7 0.314589
Target:  5'- uGCCGCUGCCGGCAUuuuGCGUGCuaugcccgucccCGCAc -3'
miRNA:   3'- -UGGUGACGGUUGUGc--CGUACG------------GCGUa -5'
23863 5' -57.8 NC_005262.1 + 52352 0.7 0.314589
Target:  5'- -gCACgaugcGCgGGCGCGGCGUGUCGCGc -3'
miRNA:   3'- ugGUGa----CGgUUGUGCCGUACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 30433 0.7 0.321588
Target:  5'- gAUCACgGCCGGCggguugucgaucgGCGGCAcggUGCCGCGc -3'
miRNA:   3'- -UGGUGaCGGUUG-------------UGCCGU---ACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 52702 0.7 0.322373
Target:  5'- gGCCGCcgGCCGACGcCGGacgagGCCGCGc -3'
miRNA:   3'- -UGGUGa-CGGUUGU-GCCgua--CGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 45102 0.7 0.322373
Target:  5'- gACCGC-GCuCAACuCGGCGggUGCCGCGa -3'
miRNA:   3'- -UGGUGaCG-GUUGuGCCGU--ACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 24469 0.69 0.362571
Target:  5'- -gCGCUGCaCGGCACGaGCGucgcgcuUGCCGCGa -3'
miRNA:   3'- ugGUGACG-GUUGUGC-CGU-------ACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 2759 0.69 0.363427
Target:  5'- -gCGCU-UCAGCACGGCGgcgggUGCCGCAUc -3'
miRNA:   3'- ugGUGAcGGUUGUGCCGU-----ACGGCGUA- -5'
23863 5' -57.8 NC_005262.1 + 14167 0.69 0.363427
Target:  5'- cGCCGC-GCCGAggagUGCGGCAaGCCGCu- -3'
miRNA:   3'- -UGGUGaCGGUU----GUGCCGUaCGGCGua -5'
23863 5' -57.8 NC_005262.1 + 46519 0.69 0.371192
Target:  5'- cGCCcCUGCCcgcgcagcagcccAGCGCGGCGccgGCCGCc- -3'
miRNA:   3'- -UGGuGACGG-------------UUGUGCCGUa--CGGCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.