miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23863 5' -57.8 NC_005262.1 + 63624 0.66 0.536889
Target:  5'- cGCUGCUGUaCGACAUGGCAaaaagcaUGUCGCu- -3'
miRNA:   3'- -UGGUGACG-GUUGUGCCGU-------ACGGCGua -5'
23863 5' -57.8 NC_005262.1 + 63274 0.67 0.465686
Target:  5'- aGCCGCcGCCuGCuugACGGCcgGCUGCu- -3'
miRNA:   3'- -UGGUGaCGGuUG---UGCCGuaCGGCGua -5'
23863 5' -57.8 NC_005262.1 + 61819 1.05 0.001068
Target:  5'- cACCACUGCCAACACGGCAUGCCGCAUc -3'
miRNA:   3'- -UGGUGACGGUUGUGCCGUACGGCGUA- -5'
23863 5' -57.8 NC_005262.1 + 60501 0.66 0.548613
Target:  5'- cGCCGg-GCC-GCGCGGCGcagGCCGCc- -3'
miRNA:   3'- -UGGUgaCGGuUGUGCCGUa--CGGCGua -5'
23863 5' -57.8 NC_005262.1 + 59121 0.66 0.537951
Target:  5'- uACCGCgccgagGCgAAC-CGGCcggGCCGCGUc -3'
miRNA:   3'- -UGGUGa-----CGgUUGuGCCGua-CGGCGUA- -5'
23863 5' -57.8 NC_005262.1 + 57729 0.67 0.474709
Target:  5'- gGCCGCgGCCuGACgcaaccccgugguGCGGUaucGUGCCGCAc -3'
miRNA:   3'- -UGGUGaCGG-UUG-------------UGCCG---UACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 57412 0.66 0.580958
Target:  5'- gACCGCcgagaaggcgGCCGACAacgcucCGGCAccguccgcggaUGCCGCGg -3'
miRNA:   3'- -UGGUGa---------CGGUUGU------GCCGU-----------ACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 53331 0.69 0.398789
Target:  5'- cGCCGCUGUCGuCGCGGCuu-CCGCc- -3'
miRNA:   3'- -UGGUGACGGUuGUGCCGuacGGCGua -5'
23863 5' -57.8 NC_005262.1 + 53243 0.71 0.306949
Target:  5'- uGCgGCUGC--GCGCGGCcgGUCGCGUc -3'
miRNA:   3'- -UGgUGACGguUGUGCCGuaCGGCGUA- -5'
23863 5' -57.8 NC_005262.1 + 52702 0.7 0.322373
Target:  5'- gGCCGCcgGCCGACGcCGGacgagGCCGCGc -3'
miRNA:   3'- -UGGUGa-CGGUUGU-GCCgua--CGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 52352 0.7 0.314589
Target:  5'- -gCACgaugcGCgGGCGCGGCGUGUCGCGc -3'
miRNA:   3'- ugGUGa----CGgUUGUGCCGUACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 52226 0.67 0.465686
Target:  5'- gGCCGCcGCCGGCAUaGCA-GCgCGCGUg -3'
miRNA:   3'- -UGGUGaCGGUUGUGcCGUaCG-GCGUA- -5'
23863 5' -57.8 NC_005262.1 + 51529 0.68 0.417276
Target:  5'- gACCG-UGCgCAACACGGCGaccgGCuCGCGUa -3'
miRNA:   3'- -UGGUgACG-GUUGUGCCGUa---CG-GCGUA- -5'
23863 5' -57.8 NC_005262.1 + 51468 0.67 0.496091
Target:  5'- uGCCGCcGCgCGcUGCGGCAcgaGCCGCAUg -3'
miRNA:   3'- -UGGUGaCG-GUuGUGCCGUa--CGGCGUA- -5'
23863 5' -57.8 NC_005262.1 + 50866 0.69 0.372061
Target:  5'- uGCCGCaggUGCCGacgcaaucGCACGGCGcGCCGuCAa -3'
miRNA:   3'- -UGGUG---ACGGU--------UGUGCCGUaCGGC-GUa -5'
23863 5' -57.8 NC_005262.1 + 50052 0.68 0.426713
Target:  5'- cCCGCgaggcugaaUGCCuGGCACGGCGUGCCa--- -3'
miRNA:   3'- uGGUG---------ACGG-UUGUGCCGUACGGcgua -5'
23863 5' -57.8 NC_005262.1 + 49782 0.66 0.5242
Target:  5'- gGCCGCUGCCGcgccggacgccccuGCAccgucCGGCccgaucgGCCGCGc -3'
miRNA:   3'- -UGGUGACGGU--------------UGU-----GCCGua-----CGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 48440 0.66 0.570123
Target:  5'- gGCgGCaUGaCCAcGCGCGcGUAUGCCGCGc -3'
miRNA:   3'- -UGgUG-AC-GGU-UGUGC-CGUACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 46690 0.67 0.506426
Target:  5'- cGCCGCgcgGUgGACcuccucGCGGCccGCCGCGUc -3'
miRNA:   3'- -UGGUGa--CGgUUG------UGCCGuaCGGCGUA- -5'
23863 5' -57.8 NC_005262.1 + 46580 0.67 0.475716
Target:  5'- gACCACgacGCCAGCGCcGUccucGCCGCAg -3'
miRNA:   3'- -UGGUGa--CGGUUGUGcCGua--CGGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.