miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23863 5' -57.8 NC_005262.1 + 43331 0.67 0.485853
Target:  5'- cGCCGCUcugcggaacaGCCcACGCGGCgacgGUGCCGgAa -3'
miRNA:   3'- -UGGUGA----------CGGuUGUGCCG----UACGGCgUa -5'
23863 5' -57.8 NC_005262.1 + 63624 0.66 0.536889
Target:  5'- cGCUGCUGUaCGACAUGGCAaaaagcaUGUCGCu- -3'
miRNA:   3'- -UGGUGACG-GUUGUGCCGU-------ACGGCGua -5'
23863 5' -57.8 NC_005262.1 + 5081 0.74 0.198259
Target:  5'- uCCGCgGUCAGCGCcucgGGCAUGCCGCc- -3'
miRNA:   3'- uGGUGaCGGUUGUG----CCGUACGGCGua -5'
23863 5' -57.8 NC_005262.1 + 17100 0.69 0.372061
Target:  5'- uCCACUGCgcGCGCGGCGcUGaCUGCAUc -3'
miRNA:   3'- uGGUGACGguUGUGCCGU-AC-GGCGUA- -5'
23863 5' -57.8 NC_005262.1 + 23409 0.67 0.465686
Target:  5'- uCCGC-GCgAACGCGGCAgacagGCCGUc- -3'
miRNA:   3'- uGGUGaCGgUUGUGCCGUa----CGGCGua -5'
23863 5' -57.8 NC_005262.1 + 17328 0.66 0.563646
Target:  5'- gGCUGCgucgugGCCGGCGCGGCAUucggguccggcgcggGCgGCGc -3'
miRNA:   3'- -UGGUGa-----CGGUUGUGCCGUA---------------CGgCGUa -5'
23863 5' -57.8 NC_005262.1 + 15754 0.69 0.380834
Target:  5'- gACgCGCuUGCgGGCGCGGCcgGCUGCu- -3'
miRNA:   3'- -UG-GUG-ACGgUUGUGCCGuaCGGCGua -5'
23863 5' -57.8 NC_005262.1 + 46237 0.66 0.570123
Target:  5'- uUCGCgcGCCGcCGCGGC-UGCCGCc- -3'
miRNA:   3'- uGGUGa-CGGUuGUGCCGuACGGCGua -5'
23863 5' -57.8 NC_005262.1 + 10085 0.66 0.570123
Target:  5'- cGCCACgGCCuucGACGCGGCcgGguuCUGCGc -3'
miRNA:   3'- -UGGUGaCGG---UUGUGCCGuaC---GGCGUa -5'
23863 5' -57.8 NC_005262.1 + 50052 0.68 0.426713
Target:  5'- cCCGCgaggcugaaUGCCuGGCACGGCGUGCCa--- -3'
miRNA:   3'- uGGUG---------ACGG-UUGUGCCGUACGGcgua -5'
23863 5' -57.8 NC_005262.1 + 19958 0.75 0.159801
Target:  5'- gGCCACcGCCGcGCGCGGCcgGcCCGCGg -3'
miRNA:   3'- -UGGUGaCGGU-UGUGCCGuaC-GGCGUa -5'
23863 5' -57.8 NC_005262.1 + 34163 0.67 0.485853
Target:  5'- cUCGCUGCCGAUGCcGguUGCgGCGUg -3'
miRNA:   3'- uGGUGACGGUUGUGcCguACGgCGUA- -5'
23863 5' -57.8 NC_005262.1 + 18080 0.69 0.398789
Target:  5'- uGCCgaACUGCuCGAuCACGGCcgGCUGCc- -3'
miRNA:   3'- -UGG--UGACG-GUU-GUGCCGuaCGGCGua -5'
23863 5' -57.8 NC_005262.1 + 30433 0.7 0.321588
Target:  5'- gAUCACgGCCGGCggguugucgaucgGCGGCAcggUGCCGCGc -3'
miRNA:   3'- -UGGUGaCGGUUG-------------UGCCGU---ACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 53243 0.71 0.306949
Target:  5'- uGCgGCUGC--GCGCGGCcgGUCGCGUc -3'
miRNA:   3'- -UGgUGACGguUGUGCCGuaCGGCGUA- -5'
23863 5' -57.8 NC_005262.1 + 51468 0.67 0.496091
Target:  5'- uGCCGCcGCgCGcUGCGGCAcgaGCCGCAUg -3'
miRNA:   3'- -UGGUGaCG-GUuGUGCCGUa--CGGCGUA- -5'
23863 5' -57.8 NC_005262.1 + 38951 0.67 0.516852
Target:  5'- -gCACUGgcgcagggugaUCGGCACGGCGccgGCCGCGa -3'
miRNA:   3'- ugGUGAC-----------GGUUGUGCCGUa--CGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 51529 0.68 0.417276
Target:  5'- gACCG-UGCgCAACACGGCGaccgGCuCGCGUa -3'
miRNA:   3'- -UGGUgACG-GUUGUGCCGUa---CG-GCGUA- -5'
23863 5' -57.8 NC_005262.1 + 1137 0.66 0.537951
Target:  5'- gGCCGCUGCgGGCuuCGauGC-UGCCGCGc -3'
miRNA:   3'- -UGGUGACGgUUGu-GC--CGuACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 59121 0.66 0.537951
Target:  5'- uACCGCgccgagGCgAAC-CGGCcggGCCGCGUc -3'
miRNA:   3'- -UGGUGa-----CGgUUGuGCCGua-CGGCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.