miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23864 3' -54.7 NC_005262.1 + 57485 0.65 0.811325
Target:  5'- gCCgACGAGAgGCGGCCGgcgagcgcaagaaggCGGCGAa -3'
miRNA:   3'- -GGaUGCUCUgCGUCGGCag-------------GCUGUUa -5'
23864 3' -54.7 NC_005262.1 + 7710 0.66 0.804752
Target:  5'- aUCgcCGAGAaaCGGCCGUCCG-CGAUc -3'
miRNA:   3'- -GGauGCUCUgcGUCGGCAGGCuGUUA- -5'
23864 3' -54.7 NC_005262.1 + 15103 0.66 0.804752
Target:  5'- uUCUGCG--GCGCGG-CGUCCGGCu-- -3'
miRNA:   3'- -GGAUGCucUGCGUCgGCAGGCUGuua -5'
23864 3' -54.7 NC_005262.1 + 17329 0.66 0.804752
Target:  5'- gCUGCGucguggccGGCGCGGCauucggGUCCGGCGc- -3'
miRNA:   3'- gGAUGCu-------CUGCGUCGg-----CAGGCUGUua -5'
23864 3' -54.7 NC_005262.1 + 34008 0.66 0.804752
Target:  5'- gUUGCuGGGGugcCGC-GCCGUCCGGCAc- -3'
miRNA:   3'- gGAUG-CUCU---GCGuCGGCAGGCUGUua -5'
23864 3' -54.7 NC_005262.1 + 37232 0.66 0.804752
Target:  5'- gCCUGCGcgaacuGGCGCAGCgCGUCgGcCGc- -3'
miRNA:   3'- -GGAUGCu-----CUGCGUCG-GCAGgCuGUua -5'
23864 3' -54.7 NC_005262.1 + 21576 0.66 0.795212
Target:  5'- aCCgcgaGCGGGuACGUcguGCCG-CCGACGAUc -3'
miRNA:   3'- -GGa---UGCUC-UGCGu--CGGCaGGCUGUUA- -5'
23864 3' -54.7 NC_005262.1 + 57057 0.66 0.795212
Target:  5'- --aACGAGGCGCGcGagaUGUUCGACAAg -3'
miRNA:   3'- ggaUGCUCUGCGU-Cg--GCAGGCUGUUa -5'
23864 3' -54.7 NC_005262.1 + 51491 0.66 0.794249
Target:  5'- uCCUACGAGAuCGagcggauCGGCCGcaaCGGCGAg -3'
miRNA:   3'- -GGAUGCUCU-GC-------GUCGGCag-GCUGUUa -5'
23864 3' -54.7 NC_005262.1 + 17997 0.66 0.785505
Target:  5'- uUCUuCGAcGugGCuGCCGggcCCGACGAg -3'
miRNA:   3'- -GGAuGCU-CugCGuCGGCa--GGCUGUUa -5'
23864 3' -54.7 NC_005262.1 + 14186 0.66 0.785505
Target:  5'- gCCUgguuaGCGAcGuCGCGGCCGagCGACAc- -3'
miRNA:   3'- -GGA-----UGCU-CuGCGUCGGCagGCUGUua -5'
23864 3' -54.7 NC_005262.1 + 53241 0.66 0.785505
Target:  5'- gCUGCGGcugcGCGCGGCCGgucgcgUCGGCAu- -3'
miRNA:   3'- gGAUGCUc---UGCGUCGGCa-----GGCUGUua -5'
23864 3' -54.7 NC_005262.1 + 11893 0.66 0.785505
Target:  5'- gCCgGCGAagcGGuCGguGCCGUUCGGCGGc -3'
miRNA:   3'- -GGaUGCU---CU-GCguCGGCAGGCUGUUa -5'
23864 3' -54.7 NC_005262.1 + 48073 0.66 0.765633
Target:  5'- aCCUGcCGcGACG-AGCCGcCCGGCGc- -3'
miRNA:   3'- -GGAU-GCuCUGCgUCGGCaGGCUGUua -5'
23864 3' -54.7 NC_005262.1 + 13755 0.66 0.765633
Target:  5'- gUCU-CGGGA-GCAGCCGgcgCCGGCu-- -3'
miRNA:   3'- -GGAuGCUCUgCGUCGGCa--GGCUGuua -5'
23864 3' -54.7 NC_005262.1 + 58996 0.67 0.745222
Target:  5'- aCCaGCGcuACGCGGCCGgcUCCGAUc-- -3'
miRNA:   3'- -GGaUGCucUGCGUCGGC--AGGCUGuua -5'
23864 3' -54.7 NC_005262.1 + 63734 0.67 0.745222
Target:  5'- uUCUucGCGAGcCGCGGCCuccCCGGCAc- -3'
miRNA:   3'- -GGA--UGCUCuGCGUCGGca-GGCUGUua -5'
23864 3' -54.7 NC_005262.1 + 992 0.67 0.744188
Target:  5'- aCCUGCGGGGCGgGGCgGUguagagcuugucgCCGAUc-- -3'
miRNA:   3'- -GGAUGCUCUGCgUCGgCA-------------GGCUGuua -5'
23864 3' -54.7 NC_005262.1 + 5315 0.67 0.734842
Target:  5'- gCUACcAGAUGgAucguGCCGUCCGACGu- -3'
miRNA:   3'- gGAUGcUCUGCgU----CGGCAGGCUGUua -5'
23864 3' -54.7 NC_005262.1 + 60494 0.67 0.734842
Target:  5'- --gGCGAGACGCcgGGCCG-CgCGGCGc- -3'
miRNA:   3'- ggaUGCUCUGCG--UCGGCaG-GCUGUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.