Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23864 | 3' | -54.7 | NC_005262.1 | + | 7710 | 0.66 | 0.804752 |
Target: 5'- aUCgcCGAGAaaCGGCCGUCCG-CGAUc -3' miRNA: 3'- -GGauGCUCUgcGUCGGCAGGCuGUUA- -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 17405 | 0.68 | 0.670825 |
Target: 5'- cCCgACGAGGCGC-GCCuGUUCGGCc-- -3' miRNA: 3'- -GGaUGCUCUGCGuCGG-CAGGCUGuua -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 32847 | 0.7 | 0.539894 |
Target: 5'- gCCUGCGGGAaguaGCGcGCCGUCaugccggaaucggCGACGAa -3' miRNA: 3'- -GGAUGCUCUg---CGU-CGGCAG-------------GCUGUUa -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 61616 | 1.08 | 0.001684 |
Target: 5'- gCCUACGAGACGCAGCCGUCCGACAAUa -3' miRNA: 3'- -GGAUGCUCUGCGUCGGCAGGCUGUUA- -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 53241 | 0.66 | 0.785505 |
Target: 5'- gCUGCGGcugcGCGCGGCCGgucgcgUCGGCAu- -3' miRNA: 3'- gGAUGCUc---UGCGUCGGCa-----GGCUGUua -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 57485 | 0.65 | 0.811325 |
Target: 5'- gCCgACGAGAgGCGGCCGgcgagcgcaagaaggCGGCGAa -3' miRNA: 3'- -GGaUGCUCUgCGUCGGCag-------------GCUGUUa -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 37232 | 0.66 | 0.804752 |
Target: 5'- gCCUGCGcgaacuGGCGCAGCgCGUCgGcCGc- -3' miRNA: 3'- -GGAUGCu-----CUGCGUCG-GCAGgCuGUua -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 34008 | 0.66 | 0.804752 |
Target: 5'- gUUGCuGGGGugcCGC-GCCGUCCGGCAc- -3' miRNA: 3'- gGAUG-CUCU---GCGuCGGCAGGCUGUua -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 17329 | 0.66 | 0.804752 |
Target: 5'- gCUGCGucguggccGGCGCGGCauucggGUCCGGCGc- -3' miRNA: 3'- gGAUGCu-------CUGCGUCGg-----CAGGCUGUua -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 49239 | 0.68 | 0.670825 |
Target: 5'- gCCgcgGCGAGACGCcuGCCGaUCCaGCGc- -3' miRNA: 3'- -GGa--UGCUCUGCGu-CGGC-AGGcUGUua -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 63734 | 0.67 | 0.745222 |
Target: 5'- uUCUucGCGAGcCGCGGCCuccCCGGCAc- -3' miRNA: 3'- -GGA--UGCUCuGCGUCGGca-GGCUGUua -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 58996 | 0.67 | 0.745222 |
Target: 5'- aCCaGCGcuACGCGGCCGgcUCCGAUc-- -3' miRNA: 3'- -GGaUGCucUGCGUCGGC--AGGCUGuua -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 21576 | 0.66 | 0.795212 |
Target: 5'- aCCgcgaGCGGGuACGUcguGCCG-CCGACGAUc -3' miRNA: 3'- -GGa---UGCUC-UGCGu--CGGCaGGCUGUUA- -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 5315 | 0.67 | 0.734842 |
Target: 5'- gCUACcAGAUGgAucguGCCGUCCGACGu- -3' miRNA: 3'- gGAUGcUCUGCgU----CGGCAGGCUGUua -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 57057 | 0.66 | 0.795212 |
Target: 5'- --aACGAGGCGCGcGagaUGUUCGACAAg -3' miRNA: 3'- ggaUGCUCUGCGU-Cg--GCAGGCUGUUa -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 13755 | 0.66 | 0.765633 |
Target: 5'- gUCU-CGGGA-GCAGCCGgcgCCGGCu-- -3' miRNA: 3'- -GGAuGCUCUgCGUCGGCa--GGCUGuua -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 62305 | 0.67 | 0.724361 |
Target: 5'- cCCUcCGcAGAUGCAGCgGcagcgCCGGCAGa -3' miRNA: 3'- -GGAuGC-UCUGCGUCGgCa----GGCUGUUa -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 28070 | 0.68 | 0.670825 |
Target: 5'- gCCaUGCGAGgaucaGCGUGGCCGUcccgCCGACGc- -3' miRNA: 3'- -GG-AUGCUC-----UGCGUCGGCA----GGCUGUua -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 11893 | 0.66 | 0.785505 |
Target: 5'- gCCgGCGAagcGGuCGguGCCGUUCGGCGGc -3' miRNA: 3'- -GGaUGCU---CU-GCguCGGCAGGCUGUUa -5' |
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23864 | 3' | -54.7 | NC_005262.1 | + | 14186 | 0.66 | 0.785505 |
Target: 5'- gCCUgguuaGCGAcGuCGCGGCCGagCGACAc- -3' miRNA: 3'- -GGA-----UGCU-CuGCGUCGGCagGCUGUua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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