Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23868 | 5' | -54.9 | NC_005262.1 | + | 60227 | 1.07 | 0.001573 |
Target: 5'- aAUCGGACACCAAGAGCAAGCGCGUCAa -3' miRNA: 3'- -UAGCCUGUGGUUCUCGUUCGCGCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 28034 | 0.78 | 0.167507 |
Target: 5'- -gCGGGCGCCGAGAGCuGGCGCa--- -3' miRNA: 3'- uaGCCUGUGGUUCUCGuUCGCGcagu -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 16573 | 0.74 | 0.284511 |
Target: 5'- -gCGGAUGCC--GAGCAGGCGCGUg- -3' miRNA: 3'- uaGCCUGUGGuuCUCGUUCGCGCAgu -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 10629 | 0.74 | 0.299226 |
Target: 5'- -aCGGACGCgAAGGGCGGGUugccgaucgccGCGUCGa -3' miRNA: 3'- uaGCCUGUGgUUCUCGUUCG-----------CGCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 32710 | 0.72 | 0.369137 |
Target: 5'- uGUCGGGCcgcggcucgcccuUCAGGucGGCGAGCGCGUCGg -3' miRNA: 3'- -UAGCCUGu------------GGUUC--UCGUUCGCGCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 15670 | 0.72 | 0.399701 |
Target: 5'- uUCGGAucgaCGCCGAGcucuuGCGcgcGGCGCGUCAc -3' miRNA: 3'- uAGCCU----GUGGUUCu----CGU---UCGCGCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 58881 | 0.71 | 0.418418 |
Target: 5'- -gCGGACAUCGAGAGCAAacugccCGaCGUCAc -3' miRNA: 3'- uaGCCUGUGGUUCUCGUUc-----GC-GCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 13021 | 0.71 | 0.437659 |
Target: 5'- --aGGagcGCGCCAAGGGCuacgcgguGCGCGUCGa -3' miRNA: 3'- uagCC---UGUGGUUCUCGuu------CGCGCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 19119 | 0.71 | 0.457397 |
Target: 5'- uUCGGA--UCGGGcGCGGGCGCGUCGc -3' miRNA: 3'- uAGCCUguGGUUCuCGUUCGCGCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 38672 | 0.7 | 0.477603 |
Target: 5'- gGUCGGACaagcagcgcGCCAGcucauccuccguGAGC-GGCGCGUCGu -3' miRNA: 3'- -UAGCCUG---------UGGUU------------CUCGuUCGCGCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 24708 | 0.69 | 0.529909 |
Target: 5'- -gCGGACACCAccgaGGAGCugaucgcgcuGGCGCGcgCGa -3' miRNA: 3'- uaGCCUGUGGU----UCUCGu---------UCGCGCa-GU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 49328 | 0.69 | 0.540632 |
Target: 5'- --aGGGCaugACCGAcGAGCAGGCGCG-CGc -3' miRNA: 3'- uagCCUG---UGGUU-CUCGUUCGCGCaGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 43650 | 0.69 | 0.540632 |
Target: 5'- cGUCGGucuCACUGucGAGCuGGUGCGUCGg -3' miRNA: 3'- -UAGCCu--GUGGUu-CUCGuUCGCGCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 60115 | 0.69 | 0.540632 |
Target: 5'- gGUCGGGCA-CGAGGGCGccaGCGUCGc -3' miRNA: 3'- -UAGCCUGUgGUUCUCGUucgCGCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 48044 | 0.69 | 0.551426 |
Target: 5'- -cCGGccGCGCCc---GCAAGCGCGUCGg -3' miRNA: 3'- uaGCC--UGUGGuucuCGUUCGCGCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 7272 | 0.69 | 0.573201 |
Target: 5'- -aCGGAUGCCGGGAacCAcGGCGCGUCc -3' miRNA: 3'- uaGCCUGUGGUUCUc-GU-UCGCGCAGu -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 59257 | 0.69 | 0.573201 |
Target: 5'- cUCaGcACGCgCAGGAGCGaaacgAGCGCGUCGc -3' miRNA: 3'- uAGcC-UGUG-GUUCUCGU-----UCGCGCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 46413 | 0.69 | 0.573201 |
Target: 5'- uGUCGGcCGCCGAGucgaccGGCAGGUucuugaucGCGUCGa -3' miRNA: 3'- -UAGCCuGUGGUUC------UCGUUCG--------CGCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 50800 | 0.69 | 0.584166 |
Target: 5'- --aGGuCGCCGAGGGCAuggAGCGCuUCGc -3' miRNA: 3'- uagCCuGUGGUUCUCGU---UCGCGcAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 11828 | 0.69 | 0.584166 |
Target: 5'- -cCGGACAguuUCGAGcGCAGGCGCGcgCGa -3' miRNA: 3'- uaGCCUGU---GGUUCuCGUUCGCGCa-GU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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