miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23868 5' -54.9 NC_005262.1 + 7272 0.69 0.573201
Target:  5'- -aCGGAUGCCGGGAacCAcGGCGCGUCc -3'
miRNA:   3'- uaGCCUGUGGUUCUc-GU-UCGCGCAGu -5'
23868 5' -54.9 NC_005262.1 + 7508 0.67 0.705366
Target:  5'- gAUCGcGACGcauCCAucGGGCAgguucggcGGCGCGUCGg -3'
miRNA:   3'- -UAGC-CUGU---GGUu-CUCGU--------UCGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 9319 0.68 0.628343
Target:  5'- uUCGGcuGCACCGcGAGCA-GCGCcUCGa -3'
miRNA:   3'- uAGCC--UGUGGUuCUCGUuCGCGcAGU- -5'
23868 5' -54.9 NC_005262.1 + 9428 0.67 0.706449
Target:  5'- cGUCGGACgucugccagcccuucGCCGGGuccucguagaucgaGGUgccGAGCGCGUCGa -3'
miRNA:   3'- -UAGCCUG---------------UGGUUC--------------UCG---UUCGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 10629 0.74 0.299226
Target:  5'- -aCGGACGCgAAGGGCGGGUugccgaucgccGCGUCGa -3'
miRNA:   3'- uaGCCUGUGgUUCUCGUUCG-----------CGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 11170 0.67 0.650489
Target:  5'- gGUCGcGCGCCAcGAGCcGGUGCGcuUCAg -3'
miRNA:   3'- -UAGCcUGUGGUuCUCGuUCGCGC--AGU- -5'
23868 5' -54.9 NC_005262.1 + 11828 0.69 0.584166
Target:  5'- -cCGGACAguuUCGAGcGCAGGCGCGcgCGa -3'
miRNA:   3'- uaGCCUGU---GGUUCuCGUUCGCGCa-GU- -5'
23868 5' -54.9 NC_005262.1 + 13021 0.71 0.437659
Target:  5'- --aGGagcGCGCCAAGGGCuacgcgguGCGCGUCGa -3'
miRNA:   3'- uagCC---UGUGGUUCUCGuu------CGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 14003 0.66 0.758424
Target:  5'- -cCGGACGgugCAGGGGCGuccGGCGCGgCAg -3'
miRNA:   3'- uaGCCUGUg--GUUCUCGU---UCGCGCaGU- -5'
23868 5' -54.9 NC_005262.1 + 15670 0.72 0.399701
Target:  5'- uUCGGAucgaCGCCGAGcucuuGCGcgcGGCGCGUCAc -3'
miRNA:   3'- uAGCCU----GUGGUUCu----CGU---UCGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 15717 0.67 0.661542
Target:  5'- cGUCGG-CGCCGGGcggcucgucgcGGCAGGUGCGa-- -3'
miRNA:   3'- -UAGCCuGUGGUUC-----------UCGUUCGCGCagu -5'
23868 5' -54.9 NC_005262.1 + 16573 0.74 0.284511
Target:  5'- -gCGGAUGCC--GAGCAGGCGCGUg- -3'
miRNA:   3'- uaGCCUGUGGuuCUCGUUCGCGCAgu -5'
23868 5' -54.9 NC_005262.1 + 17277 0.68 0.61727
Target:  5'- -cUGGGCugCugcgcGGGCAGGgGCGUCGc -3'
miRNA:   3'- uaGCCUGugGuu---CUCGUUCgCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 17315 0.66 0.726888
Target:  5'- --aGGAagcagACCGcaaGGAGCGcgAGCGCGUCGc -3'
miRNA:   3'- uagCCUg----UGGU---UCUCGU--UCGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 17925 0.68 0.60621
Target:  5'- gAUCGGcgccgACGCCAAcggcGAGCAGGuCGCGaUCGu -3'
miRNA:   3'- -UAGCC-----UGUGGUU----CUCGUUC-GCGC-AGU- -5'
23868 5' -54.9 NC_005262.1 + 18594 0.67 0.650489
Target:  5'- -gCGGACAUgccgccugCGAGGGCAGGC-CGUUAc -3'
miRNA:   3'- uaGCCUGUG--------GUUCUCGUUCGcGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 19119 0.71 0.457397
Target:  5'- uUCGGA--UCGGGcGCGGGCGCGUCGc -3'
miRNA:   3'- uAGCCUguGGUUCuCGUUCGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 21569 0.67 0.672567
Target:  5'- cAUCGGA-ACCGcGAGCGGGUaCGUCGu -3'
miRNA:   3'- -UAGCCUgUGGUuCUCGUUCGcGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 24708 0.69 0.529909
Target:  5'- -gCGGACACCAccgaGGAGCugaucgcgcuGGCGCGcgCGa -3'
miRNA:   3'- uaGCCUGUGGU----UCUCGu---------UCGCGCa-GU- -5'
23868 5' -54.9 NC_005262.1 + 24786 0.68 0.621698
Target:  5'- -cCGGGCgagcacuucgacaucGCgAAGGGCAAGCGCGa-- -3'
miRNA:   3'- uaGCCUG---------------UGgUUCUCGUUCGCGCagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.