miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23868 5' -54.9 NC_005262.1 + 28034 0.78 0.167507
Target:  5'- -gCGGGCGCCGAGAGCuGGCGCa--- -3'
miRNA:   3'- uaGCCUGUGGUUCUCGuUCGCGcagu -5'
23868 5' -54.9 NC_005262.1 + 24786 0.68 0.621698
Target:  5'- -cCGGGCgagcacuucgacaucGCgAAGGGCAAGCGCGa-- -3'
miRNA:   3'- uaGCCUG---------------UGgUUCUCGUUCGCGCagu -5'
23868 5' -54.9 NC_005262.1 + 7508 0.67 0.705366
Target:  5'- gAUCGcGACGcauCCAucGGGCAgguucggcGGCGCGUCGg -3'
miRNA:   3'- -UAGC-CUGU---GGUu-CUCGU--------UCGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 17315 0.66 0.726888
Target:  5'- --aGGAagcagACCGcaaGGAGCGcgAGCGCGUCGc -3'
miRNA:   3'- uagCCUg----UGGU---UCUCGU--UCGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 56271 0.66 0.726888
Target:  5'- -aCGGACAUCGGGcucGGCGAGCa-GUCGg -3'
miRNA:   3'- uaGCCUGUGGUUC---UCGUUCGcgCAGU- -5'
23868 5' -54.9 NC_005262.1 + 42285 0.66 0.737511
Target:  5'- -aCGGGCACC---GGCGAcguguucucGCGCGUCu -3'
miRNA:   3'- uaGCCUGUGGuucUCGUU---------CGCGCAGu -5'
23868 5' -54.9 NC_005262.1 + 60677 0.66 0.748027
Target:  5'- cUCGGcaugcuggcgACGCUggGcuucuucGCGGGCGCGUCGg -3'
miRNA:   3'- uAGCC----------UGUGGuuCu------CGUUCGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 53823 0.66 0.748027
Target:  5'- -aCGGGCAUCGAGcugacGCAccGGCGCGgcgCGg -3'
miRNA:   3'- uaGCCUGUGGUUCu----CGU--UCGCGCa--GU- -5'
23868 5' -54.9 NC_005262.1 + 58445 0.66 0.75739
Target:  5'- --aGGACGCCcc-GGCAGGCgugcgcgGCGUCAc -3'
miRNA:   3'- uagCCUGUGGuucUCGUUCG-------CGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 37723 0.68 0.60621
Target:  5'- gAUgGGGCGugAAGGGCu-GCGCGUCGa -3'
miRNA:   3'- -UAgCCUGUggUUCUCGuuCGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 52177 0.68 0.60621
Target:  5'- cUC-GACGCCGAGGGCAugaccAGCGUG-CAg -3'
miRNA:   3'- uAGcCUGUGGUUCUCGU-----UCGCGCaGU- -5'
23868 5' -54.9 NC_005262.1 + 17925 0.68 0.60621
Target:  5'- gAUCGGcgccgACGCCAAcggcGAGCAGGuCGCGaUCGu -3'
miRNA:   3'- -UAGCC-----UGUGGUU----CUCGUUC-GCGC-AGU- -5'
23868 5' -54.9 NC_005262.1 + 16573 0.74 0.284511
Target:  5'- -gCGGAUGCC--GAGCAGGCGCGUg- -3'
miRNA:   3'- uaGCCUGUGGuuCUCGUUCGCGCAgu -5'
23868 5' -54.9 NC_005262.1 + 13021 0.71 0.437659
Target:  5'- --aGGagcGCGCCAAGGGCuacgcgguGCGCGUCGa -3'
miRNA:   3'- uagCC---UGUGGUUCUCGuu------CGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 24708 0.69 0.529909
Target:  5'- -gCGGACACCAccgaGGAGCugaucgcgcuGGCGCGcgCGa -3'
miRNA:   3'- uaGCCUGUGGU----UCUCGu---------UCGCGCa-GU- -5'
23868 5' -54.9 NC_005262.1 + 49328 0.69 0.540632
Target:  5'- --aGGGCaugACCGAcGAGCAGGCGCG-CGc -3'
miRNA:   3'- uagCCUG---UGGUU-CUCGUUCGCGCaGU- -5'
23868 5' -54.9 NC_005262.1 + 60115 0.69 0.540632
Target:  5'- gGUCGGGCA-CGAGGGCGccaGCGUCGc -3'
miRNA:   3'- -UAGCCUGUgGUUCUCGUucgCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 48044 0.69 0.551426
Target:  5'- -cCGGccGCGCCc---GCAAGCGCGUCGg -3'
miRNA:   3'- uaGCC--UGUGGuucuCGUUCGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 59257 0.69 0.573201
Target:  5'- cUCaGcACGCgCAGGAGCGaaacgAGCGCGUCGc -3'
miRNA:   3'- uAGcC-UGUG-GUUCUCGU-----UCGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 50800 0.69 0.584166
Target:  5'- --aGGuCGCCGAGGGCAuggAGCGCuUCGc -3'
miRNA:   3'- uagCCuGUGGUUCUCGU---UCGCGcAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.