Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23868 | 5' | -54.9 | NC_005262.1 | + | 7272 | 0.69 | 0.573201 |
Target: 5'- -aCGGAUGCCGGGAacCAcGGCGCGUCc -3' miRNA: 3'- uaGCCUGUGGUUCUc-GU-UCGCGCAGu -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 43650 | 0.69 | 0.540632 |
Target: 5'- cGUCGGucuCACUGucGAGCuGGUGCGUCGg -3' miRNA: 3'- -UAGCCu--GUGGUu-CUCGuUCGCGCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 38672 | 0.7 | 0.477603 |
Target: 5'- gGUCGGACaagcagcgcGCCAGcucauccuccguGAGC-GGCGCGUCGu -3' miRNA: 3'- -UAGCCUG---------UGGUU------------CUCGuUCGCGCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 19119 | 0.71 | 0.457397 |
Target: 5'- uUCGGA--UCGGGcGCGGGCGCGUCGc -3' miRNA: 3'- uAGCCUguGGUUCuCGUUCGCGCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 58881 | 0.71 | 0.418418 |
Target: 5'- -gCGGACAUCGAGAGCAAacugccCGaCGUCAc -3' miRNA: 3'- uaGCCUGUGGUUCUCGUUc-----GC-GCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 15670 | 0.72 | 0.399701 |
Target: 5'- uUCGGAucgaCGCCGAGcucuuGCGcgcGGCGCGUCAc -3' miRNA: 3'- uAGCCU----GUGGUUCu----CGU---UCGCGCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 32710 | 0.72 | 0.369137 |
Target: 5'- uGUCGGGCcgcggcucgcccuUCAGGucGGCGAGCGCGUCGg -3' miRNA: 3'- -UAGCCUGu------------GGUUC--UCGUUCGCGCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 10629 | 0.74 | 0.299226 |
Target: 5'- -aCGGACGCgAAGGGCGGGUugccgaucgccGCGUCGa -3' miRNA: 3'- uaGCCUGUGgUUCUCGUUCG-----------CGCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 60227 | 1.07 | 0.001573 |
Target: 5'- aAUCGGACACCAAGAGCAAGCGCGUCAa -3' miRNA: 3'- -UAGCCUGUGGUUCUCGUUCGCGCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 46413 | 0.69 | 0.573201 |
Target: 5'- uGUCGGcCGCCGAGucgaccGGCAGGUucuugaucGCGUCGa -3' miRNA: 3'- -UAGCCuGUGGUUC------UCGUUCG--------CGCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 11828 | 0.69 | 0.584166 |
Target: 5'- -cCGGACAguuUCGAGcGCAGGCGCGcgCGa -3' miRNA: 3'- uaGCCUGU---GGUUCuCGUUCGCGCa-GU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 17277 | 0.68 | 0.61727 |
Target: 5'- -cUGGGCugCugcgcGGGCAGGgGCGUCGc -3' miRNA: 3'- uaGCCUGugGuu---CUCGUUCgCGCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 14003 | 0.66 | 0.758424 |
Target: 5'- -cCGGACGgugCAGGGGCGuccGGCGCGgCAg -3' miRNA: 3'- uaGCCUGUg--GUUCUCGU---UCGCGCaGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 9428 | 0.67 | 0.706449 |
Target: 5'- cGUCGGACgucugccagcccuucGCCGGGuccucguagaucgaGGUgccGAGCGCGUCGa -3' miRNA: 3'- -UAGCCUG---------------UGGUUC--------------UCG---UUCGCGCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 21569 | 0.67 | 0.672567 |
Target: 5'- cAUCGGA-ACCGcGAGCGGGUaCGUCGu -3' miRNA: 3'- -UAGCCUgUGGUuCUCGUUCGcGCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 15717 | 0.67 | 0.661542 |
Target: 5'- cGUCGG-CGCCGGGcggcucgucgcGGCAGGUGCGa-- -3' miRNA: 3'- -UAGCCuGUGGUUC-----------UCGUUCGCGCagu -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 18594 | 0.67 | 0.650489 |
Target: 5'- -gCGGACAUgccgccugCGAGGGCAGGC-CGUUAc -3' miRNA: 3'- uaGCCUGUG--------GUUCUCGUUCGcGCAGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 11170 | 0.67 | 0.650489 |
Target: 5'- gGUCGcGCGCCAcGAGCcGGUGCGcuUCAg -3' miRNA: 3'- -UAGCcUGUGGUuCUCGuUCGCGC--AGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 47503 | 0.68 | 0.639419 |
Target: 5'- gAUCGGuugcACGCCGcGAGCG-GCGCG-CAg -3' miRNA: 3'- -UAGCC----UGUGGUuCUCGUuCGCGCaGU- -5' |
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23868 | 5' | -54.9 | NC_005262.1 | + | 9319 | 0.68 | 0.628343 |
Target: 5'- uUCGGcuGCACCGcGAGCA-GCGCcUCGa -3' miRNA: 3'- uAGCC--UGUGGUuCUCGUuCGCGcAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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