miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23868 5' -54.9 NC_005262.1 + 28034 0.78 0.167507
Target:  5'- -gCGGGCGCCGAGAGCuGGCGCa--- -3'
miRNA:   3'- uaGCCUGUGGUUCUCGuUCGCGcagu -5'
23868 5' -54.9 NC_005262.1 + 32710 0.72 0.369137
Target:  5'- uGUCGGGCcgcggcucgcccuUCAGGucGGCGAGCGCGUCGg -3'
miRNA:   3'- -UAGCCUGu------------GGUUC--UCGUUCGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 37723 0.68 0.60621
Target:  5'- gAUgGGGCGugAAGGGCu-GCGCGUCGa -3'
miRNA:   3'- -UAgCCUGUggUUCUCGuuCGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 38672 0.7 0.477603
Target:  5'- gGUCGGACaagcagcgcGCCAGcucauccuccguGAGC-GGCGCGUCGu -3'
miRNA:   3'- -UAGCCUG---------UGGUU------------CUCGuUCGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 42285 0.66 0.737511
Target:  5'- -aCGGGCACC---GGCGAcguguucucGCGCGUCu -3'
miRNA:   3'- uaGCCUGUGGuucUCGUU---------CGCGCAGu -5'
23868 5' -54.9 NC_005262.1 + 43650 0.69 0.540632
Target:  5'- cGUCGGucuCACUGucGAGCuGGUGCGUCGg -3'
miRNA:   3'- -UAGCCu--GUGGUu-CUCGuUCGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 45716 0.66 0.758424
Target:  5'- uUCGaGGCAuUCGAGccAGUucGAGCGCGUCAc -3'
miRNA:   3'- uAGC-CUGU-GGUUC--UCG--UUCGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 46413 0.69 0.573201
Target:  5'- uGUCGGcCGCCGAGucgaccGGCAGGUucuugaucGCGUCGa -3'
miRNA:   3'- -UAGCCuGUGGUUC------UCGUUCG--------CGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 47503 0.68 0.639419
Target:  5'- gAUCGGuugcACGCCGcGAGCG-GCGCG-CAg -3'
miRNA:   3'- -UAGCC----UGUGGUuCUCGUuCGCGCaGU- -5'
23868 5' -54.9 NC_005262.1 + 48044 0.69 0.551426
Target:  5'- -cCGGccGCGCCc---GCAAGCGCGUCGg -3'
miRNA:   3'- uaGCC--UGUGGuucuCGUUCGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 49328 0.69 0.540632
Target:  5'- --aGGGCaugACCGAcGAGCAGGCGCG-CGc -3'
miRNA:   3'- uagCCUG---UGGUU-CUCGUUCGCGCaGU- -5'
23868 5' -54.9 NC_005262.1 + 50800 0.69 0.584166
Target:  5'- --aGGuCGCCGAGGGCAuggAGCGCuUCGc -3'
miRNA:   3'- uagCCuGUGGUUCUCGU---UCGCGcAGU- -5'
23868 5' -54.9 NC_005262.1 + 52177 0.68 0.60621
Target:  5'- cUC-GACGCCGAGGGCAugaccAGCGUG-CAg -3'
miRNA:   3'- uAGcCUGUGGUUCUCGU-----UCGCGCaGU- -5'
23868 5' -54.9 NC_005262.1 + 53823 0.66 0.748027
Target:  5'- -aCGGGCAUCGAGcugacGCAccGGCGCGgcgCGg -3'
miRNA:   3'- uaGCCUGUGGUUCu----CGU--UCGCGCa--GU- -5'
23868 5' -54.9 NC_005262.1 + 56271 0.66 0.726888
Target:  5'- -aCGGACAUCGGGcucGGCGAGCa-GUCGg -3'
miRNA:   3'- uaGCCUGUGGUUC---UCGUUCGcgCAGU- -5'
23868 5' -54.9 NC_005262.1 + 58445 0.66 0.75739
Target:  5'- --aGGACGCCcc-GGCAGGCgugcgcgGCGUCAc -3'
miRNA:   3'- uagCCUGUGGuucUCGUUCG-------CGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 58881 0.71 0.418418
Target:  5'- -gCGGACAUCGAGAGCAAacugccCGaCGUCAc -3'
miRNA:   3'- uaGCCUGUGGUUCUCGUUc-----GC-GCAGU- -5'
23868 5' -54.9 NC_005262.1 + 59257 0.69 0.573201
Target:  5'- cUCaGcACGCgCAGGAGCGaaacgAGCGCGUCGc -3'
miRNA:   3'- uAGcC-UGUG-GUUCUCGU-----UCGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 60115 0.69 0.540632
Target:  5'- gGUCGGGCA-CGAGGGCGccaGCGUCGc -3'
miRNA:   3'- -UAGCCUGUgGUUCUCGUucgCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 60227 1.07 0.001573
Target:  5'- aAUCGGACACCAAGAGCAAGCGCGUCAa -3'
miRNA:   3'- -UAGCCUGUGGUUCUCGUUCGCGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.