miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23868 5' -54.9 NC_005262.1 + 14003 0.66 0.758424
Target:  5'- -cCGGACGgugCAGGGGCGuccGGCGCGgCAg -3'
miRNA:   3'- uaGCCUGUg--GUUCUCGU---UCGCGCaGU- -5'
23868 5' -54.9 NC_005262.1 + 15670 0.72 0.399701
Target:  5'- uUCGGAucgaCGCCGAGcucuuGCGcgcGGCGCGUCAc -3'
miRNA:   3'- uAGCCU----GUGGUUCu----CGU---UCGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 10629 0.74 0.299226
Target:  5'- -aCGGACGCgAAGGGCGGGUugccgaucgccGCGUCGa -3'
miRNA:   3'- uaGCCUGUGgUUCUCGUUCG-----------CGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 60227 1.07 0.001573
Target:  5'- aAUCGGACACCAAGAGCAAGCGCGUCAa -3'
miRNA:   3'- -UAGCCUGUGGUUCUCGUUCGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 18594 0.67 0.650489
Target:  5'- -gCGGACAUgccgccugCGAGGGCAGGC-CGUUAc -3'
miRNA:   3'- uaGCCUGUG--------GUUCUCGUUCGcGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 11170 0.67 0.650489
Target:  5'- gGUCGcGCGCCAcGAGCcGGUGCGcuUCAg -3'
miRNA:   3'- -UAGCcUGUGGUuCUCGuUCGCGC--AGU- -5'
23868 5' -54.9 NC_005262.1 + 9319 0.68 0.628343
Target:  5'- uUCGGcuGCACCGcGAGCA-GCGCcUCGa -3'
miRNA:   3'- uAGCC--UGUGGUuCUCGUuCGCGcAGU- -5'
23868 5' -54.9 NC_005262.1 + 17277 0.68 0.61727
Target:  5'- -cUGGGCugCugcgcGGGCAGGgGCGUCGc -3'
miRNA:   3'- uaGCCUGugGuu---CUCGUUCgCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 7272 0.69 0.573201
Target:  5'- -aCGGAUGCCGGGAacCAcGGCGCGUCc -3'
miRNA:   3'- uaGCCUGUGGUUCUc-GU-UCGCGCAGu -5'
23868 5' -54.9 NC_005262.1 + 58881 0.71 0.418418
Target:  5'- -gCGGACAUCGAGAGCAAacugccCGaCGUCAc -3'
miRNA:   3'- uaGCCUGUGGUUCUCGUUc-----GC-GCAGU- -5'
23868 5' -54.9 NC_005262.1 + 43650 0.69 0.540632
Target:  5'- cGUCGGucuCACUGucGAGCuGGUGCGUCGg -3'
miRNA:   3'- -UAGCCu--GUGGUu-CUCGuUCGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 46413 0.69 0.573201
Target:  5'- uGUCGGcCGCCGAGucgaccGGCAGGUucuugaucGCGUCGa -3'
miRNA:   3'- -UAGCCuGUGGUUC------UCGUUCG--------CGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 9428 0.67 0.706449
Target:  5'- cGUCGGACgucugccagcccuucGCCGGGuccucguagaucgaGGUgccGAGCGCGUCGa -3'
miRNA:   3'- -UAGCCUG---------------UGGUUC--------------UCG---UUCGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 38672 0.7 0.477603
Target:  5'- gGUCGGACaagcagcgcGCCAGcucauccuccguGAGC-GGCGCGUCGu -3'
miRNA:   3'- -UAGCCUG---------UGGUU------------CUCGuUCGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 21569 0.67 0.672567
Target:  5'- cAUCGGA-ACCGcGAGCGGGUaCGUCGu -3'
miRNA:   3'- -UAGCCUgUGGUuCUCGUUCGcGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 11828 0.69 0.584166
Target:  5'- -cCGGACAguuUCGAGcGCAGGCGCGcgCGa -3'
miRNA:   3'- uaGCCUGU---GGUUCuCGUUCGCGCa-GU- -5'
23868 5' -54.9 NC_005262.1 + 19119 0.71 0.457397
Target:  5'- uUCGGA--UCGGGcGCGGGCGCGUCGc -3'
miRNA:   3'- uAGCCUguGGUUCuCGUUCGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 32710 0.72 0.369137
Target:  5'- uGUCGGGCcgcggcucgcccuUCAGGucGGCGAGCGCGUCGg -3'
miRNA:   3'- -UAGCCUGu------------GGUUC--UCGUUCGCGCAGU- -5'
23868 5' -54.9 NC_005262.1 + 15717 0.67 0.661542
Target:  5'- cGUCGG-CGCCGGGcggcucgucgcGGCAGGUGCGa-- -3'
miRNA:   3'- -UAGCCuGUGGUUC-----------UCGUUCGCGCagu -5'
23868 5' -54.9 NC_005262.1 + 47503 0.68 0.639419
Target:  5'- gAUCGGuugcACGCCGcGAGCG-GCGCG-CAg -3'
miRNA:   3'- -UAGCC----UGUGGUuCUCGUuCGCGCaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.