miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23869 3' -56.2 NC_005262.1 + 20171 0.67 0.630604
Target:  5'- cCAGuucugcGcCGGUGCCGGCgagcGUCACCu -3'
miRNA:   3'- aGUCuaa---CaGCCGCGGCCG----UAGUGGc -5'
23869 3' -56.2 NC_005262.1 + 14037 0.67 0.630604
Target:  5'- cCGGAgccUCGGgCGCgGGCGcCGCCGg -3'
miRNA:   3'- aGUCUaacAGCC-GCGgCCGUaGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 52144 0.67 0.630604
Target:  5'- cCAGcgUGcagCGcGaCGCCGGCGcCGCCGa -3'
miRNA:   3'- aGUCuaACa--GC-C-GCGGCCGUaGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 4934 0.67 0.630604
Target:  5'- gCGGAg---CuGCGCCGGCgugacGUCGCCGa -3'
miRNA:   3'- aGUCUaacaGcCGCGGCCG-----UAGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 17126 0.67 0.619803
Target:  5'- aUCGGcgggcGUCGGUGCCGGCGcCaugcuGCCGc -3'
miRNA:   3'- -AGUCuaa--CAGCCGCGGCCGUaG-----UGGC- -5'
23869 3' -56.2 NC_005262.1 + 49844 0.67 0.619803
Target:  5'- --cGAaUGgccCGGUGCCGGCGgcggUACCGg -3'
miRNA:   3'- aguCUaACa--GCCGCGGCCGUa---GUGGC- -5'
23869 3' -56.2 NC_005262.1 + 32856 0.67 0.619803
Target:  5'- uUCGGcccgcacgUG-CGGCGCCGaGCuguUCGCCGc -3'
miRNA:   3'- -AGUCua------ACaGCCGCGGC-CGu--AGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 47923 0.68 0.613327
Target:  5'- gCAGAc-GcCGaGCGCCGGCGacaucgaagauuuguUCACCGa -3'
miRNA:   3'- aGUCUaaCaGC-CGCGGCCGU---------------AGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 33708 0.68 0.613327
Target:  5'- cCGGcgUGUcgucgcccuucuugcCGGCGUCGuCGUCGCCGg -3'
miRNA:   3'- aGUCuaACA---------------GCCGCGGCcGUAGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 1929 0.68 0.609012
Target:  5'- gCuGAUcGUCGGCGCCuuGGCGcuggggauuuUCAUCGg -3'
miRNA:   3'- aGuCUAaCAGCCGCGG--CCGU----------AGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 45450 0.68 0.598241
Target:  5'- cUCGGAaccaucGcCGGCGCgGGCAUCAUgGc -3'
miRNA:   3'- -AGUCUaa----CaGCCGCGgCCGUAGUGgC- -5'
23869 3' -56.2 NC_005262.1 + 13716 0.68 0.598241
Target:  5'- gCGGGUucgGUCGGCGCagCGGCcuucGUCuCCGg -3'
miRNA:   3'- aGUCUAa--CAGCCGCG--GCCG----UAGuGGC- -5'
23869 3' -56.2 NC_005262.1 + 15872 0.68 0.598241
Target:  5'- --cGAUgucGcCGGCGCuCGGCGUCugCa -3'
miRNA:   3'- aguCUAa--CaGCCGCG-GCCGUAGugGc -5'
23869 3' -56.2 NC_005262.1 + 40982 0.68 0.598241
Target:  5'- gUCGGGUUucUGGCGgCGGCGcUCGCUGc -3'
miRNA:   3'- -AGUCUAAcaGCCGCgGCCGU-AGUGGC- -5'
23869 3' -56.2 NC_005262.1 + 38330 0.68 0.587497
Target:  5'- ------aGUUGGCGagCGGCAUCGCCu -3'
miRNA:   3'- agucuaaCAGCCGCg-GCCGUAGUGGc -5'
23869 3' -56.2 NC_005262.1 + 39581 0.68 0.587497
Target:  5'- aUCGGcgUGcCGGCGCa-GCGUCGCgGc -3'
miRNA:   3'- -AGUCuaACaGCCGCGgcCGUAGUGgC- -5'
23869 3' -56.2 NC_005262.1 + 21549 0.68 0.576789
Target:  5'- gCAGugagcgCGGCGCuCGGCAUCggaACCGc -3'
miRNA:   3'- aGUCuaaca-GCCGCG-GCCGUAG---UGGC- -5'
23869 3' -56.2 NC_005262.1 + 22555 0.68 0.570385
Target:  5'- gUCAGGUUGUUGaacaucgucaugagcGUGCCGGCAgUCAUaCGg -3'
miRNA:   3'- -AGUCUAACAGC---------------CGCGGCCGU-AGUG-GC- -5'
23869 3' -56.2 NC_005262.1 + 22318 0.68 0.566126
Target:  5'- gUguGAUUGU--GCGCCGGCAUCuggGCUGc -3'
miRNA:   3'- -AguCUAACAgcCGCGGCCGUAG---UGGC- -5'
23869 3' -56.2 NC_005262.1 + 27141 0.68 0.565062
Target:  5'- --cGAUccgUGUCugguacuGGUGCCGGCA-CACCGg -3'
miRNA:   3'- aguCUA---ACAG-------CCGCGGCCGUaGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.