Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23870 | 5' | -57 | NC_005262.1 | + | 49157 | 0.68 | 0.527882 |
|
Target: 5'- uGGGCgugcaGGCCgcaucgGCCG-CAGCGGCGc -3' miRNA: 3'- -CCUGacag-CCGGa-----UGGUaGUCGCCGU- -5' |
|||||||
| 23870 | 5' | -57 | NC_005262.1 | + | 63011 | 0.68 | 0.559369 |
|
Target: 5'- uGGAUuuUGUCGGCCagUACggCAUCGGCaacuGGCGc -3' miRNA: 3'- -CCUG--ACAGCCGG--AUG--GUAGUCG----CCGU- -5' |
|||||||
| 23870 | 5' | -57 | NC_005262.1 | + | 15258 | 0.67 | 0.591358 |
|
Target: 5'- cGGGCc--CGGCCUGCacuUCGacGCGGCAu -3' miRNA: 3'- -CCUGacaGCCGGAUGgu-AGU--CGCCGU- -5' |
|||||||
| 23870 | 5' | -57 | NC_005262.1 | + | 31928 | 0.67 | 0.623642 |
|
Target: 5'- cGGAC-GUCGccaCCUGCUGUaCGGCGGUg -3' miRNA: 3'- -CCUGaCAGCc--GGAUGGUA-GUCGCCGu -5' |
|||||||
| 23870 | 5' | -57 | NC_005262.1 | + | 33888 | 0.66 | 0.634429 |
|
Target: 5'- aGACgaucgugcGUCGGCCggcgGCCcgaucggUAGCGGCGg -3' miRNA: 3'- cCUGa-------CAGCCGGa---UGGua-----GUCGCCGU- -5' |
|||||||
| 23870 | 5' | -57 | NC_005262.1 | + | 48366 | 0.66 | 0.645214 |
|
Target: 5'- -uGCUGgCGGCCgGCUAUCAGuCGGg- -3' miRNA: 3'- ccUGACaGCCGGaUGGUAGUC-GCCgu -5' |
|||||||
| 23870 | 5' | -57 | NC_005262.1 | + | 37006 | 0.66 | 0.645214 |
|
Target: 5'- ----cGUCGGCgaGacggaCAUCGGCGGCGg -3' miRNA: 3'- ccugaCAGCCGgaUg----GUAGUCGCCGU- -5' |
|||||||
| 23870 | 5' | -57 | NC_005262.1 | + | 7627 | 0.66 | 0.655988 |
|
Target: 5'- cGGAC-GUUGGCCgaaugucgaCGcCGGCGGCGa -3' miRNA: 3'- -CCUGaCAGCCGGaug------GUaGUCGCCGU- -5' |
|||||||
| 23870 | 5' | -57 | NC_005262.1 | + | 60378 | 0.72 | 0.341303 |
|
Target: 5'- cGGCgaagGUCgccGGCCgcaagAUCGUCGGCGGCAu -3' miRNA: 3'- cCUGa---CAG---CCGGa----UGGUAGUCGCCGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home