miRNA display CGI


Results 21 - 40 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23873 3' -56.7 NC_005262.1 + 18029 0.68 0.567114
Target:  5'- uCGCCGCGAUGccgaucGGCGucgcGUUCGCgGGAAc -3'
miRNA:   3'- -GCGGCGCUGU------UCGCu---UAGGUGgCCUU- -5'
23873 3' -56.7 NC_005262.1 + 35639 0.68 0.556459
Target:  5'- gGCaCGCGGCGGGCGAugggCUACuCGGu- -3'
miRNA:   3'- gCG-GCGCUGUUCGCUua--GGUG-GCCuu -5'
23873 3' -56.7 NC_005262.1 + 6616 0.68 0.545863
Target:  5'- aGCgggaGCGACAcgagcGGCGAGgggUCGCCGGGGa -3'
miRNA:   3'- gCGg---CGCUGU-----UCGCUUa--GGUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 4813 0.68 0.545863
Target:  5'- aCGgCGCGGgAGGCGugaggCCGCCGGc- -3'
miRNA:   3'- -GCgGCGCUgUUCGCuua--GGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 68 0.68 0.545863
Target:  5'- gGCCGCGGCucGCGAagaaGUCgGCCGc-- -3'
miRNA:   3'- gCGGCGCUGuuCGCU----UAGgUGGCcuu -5'
23873 3' -56.7 NC_005262.1 + 32059 0.68 0.545863
Target:  5'- gCGCuugCGCGACAuGCGA--CCGCCGGc- -3'
miRNA:   3'- -GCG---GCGCUGUuCGCUuaGGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 40126 0.68 0.545863
Target:  5'- gCGCCGCu-CGGGCGGcAUCCA-CGGAu -3'
miRNA:   3'- -GCGGCGcuGUUCGCU-UAGGUgGCCUu -5'
23873 3' -56.7 NC_005262.1 + 36860 0.68 0.535332
Target:  5'- gGUCGCgGAUAggcGGCGAAUCCGgcUCGGGAu -3'
miRNA:   3'- gCGGCG-CUGU---UCGCUUAGGU--GGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 34037 0.68 0.524874
Target:  5'- aCGCCG-GGCGguugaGGCGggUUaGCCGGGAg -3'
miRNA:   3'- -GCGGCgCUGU-----UCGCuuAGgUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 50803 0.68 0.514494
Target:  5'- uCGCCGagGGCAuggAGCGcuUCgCGCCGGAGa -3'
miRNA:   3'- -GCGGCg-CUGU---UCGCuuAG-GUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 2005 0.68 0.514494
Target:  5'- gCGCCGCG-CAGGCGAAaacgCGCUGGu- -3'
miRNA:   3'- -GCGGCGCuGUUCGCUUag--GUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 50964 0.69 0.504198
Target:  5'- aGCCGaCG-CAGGcCGAGUucUCGCCGGAGa -3'
miRNA:   3'- gCGGC-GCuGUUC-GCUUA--GGUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 35198 0.69 0.493993
Target:  5'- uGCCGCG-CAugaAGCGGAUCaCGCCGu-- -3'
miRNA:   3'- gCGGCGCuGU---UCGCUUAG-GUGGCcuu -5'
23873 3' -56.7 NC_005262.1 + 25536 0.69 0.493993
Target:  5'- gCGUCGCGACGuccgugcgcGGCGGcacgAUCCACCGc-- -3'
miRNA:   3'- -GCGGCGCUGU---------UCGCU----UAGGUGGCcuu -5'
23873 3' -56.7 NC_005262.1 + 42269 0.69 0.463969
Target:  5'- uGCgGCGACGAGCGGcacGggCACCGGc- -3'
miRNA:   3'- gCGgCGCUGUUCGCU---UagGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 33876 0.69 0.463969
Target:  5'- aCGCCGCGcGCGAGaCGAucgugcGUCgGCCGGc- -3'
miRNA:   3'- -GCGGCGC-UGUUC-GCU------UAGgUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 25940 0.69 0.463969
Target:  5'- gCGCCGauGCAGG-GAAUCCACCGa-- -3'
miRNA:   3'- -GCGGCgcUGUUCgCUUAGGUGGCcuu -5'
23873 3' -56.7 NC_005262.1 + 58766 0.7 0.454174
Target:  5'- gCGCCGgcCGGCGAGCaacugCCGCUGGAGg -3'
miRNA:   3'- -GCGGC--GCUGUUCGcuua-GGUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 23680 0.7 0.454174
Target:  5'- cCGCCcgaGCGGCGcguGUGggUCUACCGGc- -3'
miRNA:   3'- -GCGG---CGCUGUu--CGCuuAGGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 14166 0.7 0.444492
Target:  5'- cCGCCGCGccgaggagugcgGCAAGCcgcUCCAuCCGGAAc -3'
miRNA:   3'- -GCGGCGC------------UGUUCGcuuAGGU-GGCCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.