miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23874 3' -63.1 NC_005262.1 + 5041 0.7 0.183763
Target:  5'- uCGCCGGCCGGCGccugaucggcgGGCAggcccGCgGCgGCg- -3'
miRNA:   3'- -GCGGCCGGCCGC-----------UCGU-----UGaCGgCGac -5'
23874 3' -63.1 NC_005262.1 + 32738 0.7 0.183763
Target:  5'- uGCCGGCCGaccacuccGUGAGCGACgcGgUGCUGa -3'
miRNA:   3'- gCGGCCGGC--------CGCUCGUUGa-CgGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 58870 0.7 0.183763
Target:  5'- aCGCCGGCgcagccCGcGCGuuGGCuGCUGCCGCg- -3'
miRNA:   3'- -GCGGCCG------GC-CGC--UCGuUGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 49753 0.7 0.185645
Target:  5'- aCGCCGG-CGGCGcccGCGcccgaggcuccggccGCUGCCGCg- -3'
miRNA:   3'- -GCGGCCgGCCGCu--CGU---------------UGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 10456 0.7 0.188501
Target:  5'- uCGCgCGGUCGGCGAgGUAGCgGCgCGCg- -3'
miRNA:   3'- -GCG-GCCGGCCGCU-CGUUGaCG-GCGac -5'
23874 3' -63.1 NC_005262.1 + 11005 0.7 0.188501
Target:  5'- uCGCaCGGCUGacgaGCGAgGCGGCUGUCGCg- -3'
miRNA:   3'- -GCG-GCCGGC----CGCU-CGUUGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 14055 0.7 0.193346
Target:  5'- gCGCC-GCCGGCGucgguGCGGCUucgGCCGCc- -3'
miRNA:   3'- -GCGGcCGGCCGCu----CGUUGA---CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 23406 0.7 0.193346
Target:  5'- aGgCGGCgaugCGGCGGGCAGCaugaGCCGCg- -3'
miRNA:   3'- gCgGCCG----GCCGCUCGUUGa---CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 10781 0.7 0.193346
Target:  5'- gCGCCGGgCGcGCGGuacugcugcGCgAGCUGCCGCg- -3'
miRNA:   3'- -GCGGCCgGC-CGCU---------CG-UUGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 27829 0.7 0.198301
Target:  5'- aGCgCGGCCGGUcugacuucaAGguGCUGCCGCg- -3'
miRNA:   3'- gCG-GCCGGCCGc--------UCguUGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 19968 0.7 0.203365
Target:  5'- gCGCgCGGCCGGCccGCGGCcgugucGCCGCg- -3'
miRNA:   3'- -GCG-GCCGGCCGcuCGUUGa-----CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 50838 0.7 0.203365
Target:  5'- aCGCCGaGCCGGUcGGCGA-UGCCGUc- -3'
miRNA:   3'- -GCGGC-CGGCCGcUCGUUgACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 5986 0.7 0.203365
Target:  5'- uGCCGGCCGGCu----GCUGCuCGUUGc -3'
miRNA:   3'- gCGGCCGGCCGcucguUGACG-GCGAC- -5'
23874 3' -63.1 NC_005262.1 + 46810 0.7 0.208019
Target:  5'- gCGCuCGGCCGGCG-GCAGCagggcaauaucggUGCCcgGCUu -3'
miRNA:   3'- -GCG-GCCGGCCGCuCGUUG-------------ACGG--CGAc -5'
23874 3' -63.1 NC_005262.1 + 9932 0.7 0.208542
Target:  5'- uGUCGGCCGGCuuGAGCGcgaucuGCUuGCCGUc- -3'
miRNA:   3'- gCGGCCGGCCG--CUCGU------UGA-CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 14001 0.7 0.210644
Target:  5'- gGCCGGacggugcaggggcguCCGGCGcGGCAGCgGCCGgaGc -3'
miRNA:   3'- gCGGCC---------------GGCCGC-UCGUUGaCGGCgaC- -5'
23874 3' -63.1 NC_005262.1 + 23240 0.69 0.213831
Target:  5'- cCGCCGGuguugcCCGGCGcGUAAgaGCCGCc- -3'
miRNA:   3'- -GCGGCC------GGCCGCuCGUUgaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 30431 0.69 0.213831
Target:  5'- aCGaucaCGGCCGGCGgguugucgaucGGCGGCacggUGCCGCg- -3'
miRNA:   3'- -GCg---GCCGGCCGC-----------UCGUUG----ACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 16963 0.69 0.219236
Target:  5'- aCGCCGGCgcgcuuuucuCGGCGAGCGcGCggGCCuGCa- -3'
miRNA:   3'- -GCGGCCG----------GCCGCUCGU-UGa-CGG-CGac -5'
23874 3' -63.1 NC_005262.1 + 22247 0.69 0.219236
Target:  5'- aCGCCGGCCGGCcugcGCAucAC-GCCGUc- -3'
miRNA:   3'- -GCGGCCGGCCGcu--CGU--UGaCGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.