miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23875 5' -60.6 NC_005262.1 + 58493 1.1 0.000413
Target:  5'- gCCAGCUCCGACCGCCUCGACCGCGUGa -3'
miRNA:   3'- -GGUCGAGGCUGGCGGAGCUGGCGCAC- -5'
23875 5' -60.6 NC_005262.1 + 20293 0.76 0.122635
Target:  5'- aCGGUUgCGACCGCCUUGccguCCGCGUa -3'
miRNA:   3'- gGUCGAgGCUGGCGGAGCu---GGCGCAc -5'
23875 5' -60.6 NC_005262.1 + 46231 0.76 0.123938
Target:  5'- cUCGGCUUCGcgcgccgccgcggcuGCCGCCUcgcgcgCGACCGCGUGc -3'
miRNA:   3'- -GGUCGAGGC---------------UGGCGGA------GCUGGCGCAC- -5'
23875 5' -60.6 NC_005262.1 + 1111 0.73 0.181117
Target:  5'- aCCGGUUCCG-CCGCCUCuugcucugcGGCCGCu-- -3'
miRNA:   3'- -GGUCGAGGCuGGCGGAG---------CUGGCGcac -5'
23875 5' -60.6 NC_005262.1 + 42452 0.73 0.185789
Target:  5'- gCGGCcUUGGCCGCCUCGAUCGCc-- -3'
miRNA:   3'- gGUCGaGGCUGGCGGAGCUGGCGcac -5'
23875 5' -60.6 NC_005262.1 + 25257 0.73 0.195452
Target:  5'- gCCGGCUCCugcGCCGCCUCuggcACCGCa-- -3'
miRNA:   3'- -GGUCGAGGc--UGGCGGAGc---UGGCGcac -5'
23875 5' -60.6 NC_005262.1 + 6875 0.73 0.200446
Target:  5'- cUCGGCgaugCCGGCCGCgaucgcguuUUCGAgCCGCGUGc -3'
miRNA:   3'- -GGUCGa---GGCUGGCG---------GAGCU-GGCGCAC- -5'
23875 5' -60.6 NC_005262.1 + 38064 0.73 0.205551
Target:  5'- gCCGGCcugCgCGAUCGCCUCGGCCugcauCGUGa -3'
miRNA:   3'- -GGUCGa--G-GCUGGCGGAGCUGGc----GCAC- -5'
23875 5' -60.6 NC_005262.1 + 22683 0.72 0.210769
Target:  5'- aCCAGUgcgCaGACgCGCCUCGACCGCc-- -3'
miRNA:   3'- -GGUCGa--GgCUG-GCGGAGCUGGCGcac -5'
23875 5' -60.6 NC_005262.1 + 38185 0.72 0.216099
Target:  5'- aCCA-CUUCGGCCGCCUUGuCCGgGUa -3'
miRNA:   3'- -GGUcGAGGCUGGCGGAGCuGGCgCAc -5'
23875 5' -60.6 NC_005262.1 + 18404 0.72 0.216099
Target:  5'- aCCGGCuUCCGAgCGCCUCaauGAgCGCGa- -3'
miRNA:   3'- -GGUCG-AGGCUgGCGGAG---CUgGCGCac -5'
23875 5' -60.6 NC_005262.1 + 63590 0.72 0.227108
Target:  5'- uCUGGCUCCG-CCGCCcCcGCCgGCGUGg -3'
miRNA:   3'- -GGUCGAGGCuGGCGGaGcUGG-CGCAC- -5'
23875 5' -60.6 NC_005262.1 + 46539 0.72 0.227108
Target:  5'- cCCAGCgcggcgCCGGCCGCCgCucCCGCGa- -3'
miRNA:   3'- -GGUCGa-----GGCUGGCGGaGcuGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 39696 0.72 0.232788
Target:  5'- uCCA-UUCCGuCCGCCgcaUCGACCGCGa- -3'
miRNA:   3'- -GGUcGAGGCuGGCGG---AGCUGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 49775 0.71 0.244507
Target:  5'- -aGGCUCCGGCCGCU---GCCGCGc- -3'
miRNA:   3'- ggUCGAGGCUGGCGGagcUGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 47186 0.71 0.246909
Target:  5'- cCCAGCUCgaaacgcggcugcuuCG-CCGCCUCGACCaGCa-- -3'
miRNA:   3'- -GGUCGAG---------------GCuGGCGGAGCUGG-CGcac -5'
23875 5' -60.6 NC_005262.1 + 14072 0.71 0.250548
Target:  5'- gCGGCUUCGGCCGCCgguUCG-CCGCc-- -3'
miRNA:   3'- gGUCGAGGCUGGCGG---AGCuGGCGcac -5'
23875 5' -60.6 NC_005262.1 + 25250 0.71 0.250548
Target:  5'- gCGGCggugCCGAUCGUCaccgCGACCGUGUa -3'
miRNA:   3'- gGUCGa---GGCUGGCGGa---GCUGGCGCAc -5'
23875 5' -60.6 NC_005262.1 + 12959 0.71 0.275948
Target:  5'- aCGGCaucgCCGACCGCUcggcgucgaCGACCGCGa- -3'
miRNA:   3'- gGUCGa---GGCUGGCGGa--------GCUGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 20445 0.7 0.282611
Target:  5'- aCGGUUCCGGCa-CCgUCG-CCGCGUGg -3'
miRNA:   3'- gGUCGAGGCUGgcGG-AGCuGGCGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.