miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23875 5' -60.6 NC_005262.1 + 352 0.67 0.442426
Target:  5'- aCCGGCUCCGGCUGCUgggUGGCgaggaugucaGCGa- -3'
miRNA:   3'- -GGUCGAGGCUGGCGGa--GCUGg---------CGCac -5'
23875 5' -60.6 NC_005262.1 + 515 0.67 0.461028
Target:  5'- gCCAGCagCCGGCCGUCaagcaGGCgGCGg- -3'
miRNA:   3'- -GGUCGa-GGCUGGCGGag---CUGgCGCac -5'
23875 5' -60.6 NC_005262.1 + 1111 0.73 0.181117
Target:  5'- aCCGGUUCCG-CCGCCUCuugcucugcGGCCGCu-- -3'
miRNA:   3'- -GGUCGAGGCuGGCGGAG---------CUGGCGcac -5'
23875 5' -60.6 NC_005262.1 + 2289 0.67 0.439672
Target:  5'- uCCGGUcgagcgagaucauuUCCGACUGUUcCGGCCGCGc- -3'
miRNA:   3'- -GGUCG--------------AGGCUGGCGGaGCUGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 2817 0.66 0.536141
Target:  5'- --cGCUCC-ACCugcGCCUCGACCucguuugcgcgcugGCGUGc -3'
miRNA:   3'- gguCGAGGcUGG---CGGAGCUGG--------------CGCAC- -5'
23875 5' -60.6 NC_005262.1 + 4670 0.67 0.470483
Target:  5'- gCGGC-CCGGCCgguucGCCUCGG-CGCGg- -3'
miRNA:   3'- gGUCGaGGCUGG-----CGGAGCUgGCGCac -5'
23875 5' -60.6 NC_005262.1 + 4835 0.7 0.310538
Target:  5'- gCCGGCggCCGGCUGgUUCGACUGCu-- -3'
miRNA:   3'- -GGUCGa-GGCUGGCgGAGCUGGCGcac -5'
23875 5' -60.6 NC_005262.1 + 4873 0.7 0.302654
Target:  5'- gCAGCUugCCGAgCGCCgacUCGACCugcuucgGCGUGa -3'
miRNA:   3'- gGUCGA--GGCUgGCGG---AGCUGG-------CGCAC- -5'
23875 5' -60.6 NC_005262.1 + 6453 0.66 0.509238
Target:  5'- uUCGGCUCCGGCgagaCGCCggcaUCGAC-GCGg- -3'
miRNA:   3'- -GGUCGAGGCUG----GCGG----AGCUGgCGCac -5'
23875 5' -60.6 NC_005262.1 + 6875 0.73 0.200446
Target:  5'- cUCGGCgaugCCGGCCGCgaucgcguuUUCGAgCCGCGUGc -3'
miRNA:   3'- -GGUCGa---GGCUGGCG---------GAGCU-GGCGCAC- -5'
23875 5' -60.6 NC_005262.1 + 9314 0.67 0.439672
Target:  5'- gCGGCUUCGGCugcaccgcgagcagCGCCUCGACguUGCGcUGa -3'
miRNA:   3'- gGUCGAGGCUG--------------GCGGAGCUG--GCGC-AC- -5'
23875 5' -60.6 NC_005262.1 + 11440 0.66 0.509238
Target:  5'- uCCAGCgucCCGuCCGCCUucauccggCGAUaCGCGUc -3'
miRNA:   3'- -GGUCGa--GGCuGGCGGA--------GCUG-GCGCAc -5'
23875 5' -60.6 NC_005262.1 + 12076 0.67 0.424255
Target:  5'- aUCAGCUCCGGCUuuuuGaUCUCG-CCGCGc- -3'
miRNA:   3'- -GGUCGAGGCUGG----C-GGAGCuGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 12606 0.68 0.380851
Target:  5'- gCGGCUCCagcgGGCCGCCgcgucgUCGGCUGCcUGc -3'
miRNA:   3'- gGUCGAGG----CUGGCGG------AGCUGGCGcAC- -5'
23875 5' -60.6 NC_005262.1 + 12959 0.71 0.275948
Target:  5'- aCGGCaucgCCGACCGCUcggcgucgaCGACCGCGa- -3'
miRNA:   3'- gGUCGa---GGCUGGCGGa--------GCUGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 13494 0.66 0.489682
Target:  5'- gCCGGCUCCucaauccgcgcGGCCGUcacgggCUCGGCCgGCGc- -3'
miRNA:   3'- -GGUCGAGG-----------CUGGCG------GAGCUGG-CGCac -5'
23875 5' -60.6 NC_005262.1 + 14027 0.68 0.380851
Target:  5'- gCGGCagCGGCCggaGCCUCGGgCGCGg- -3'
miRNA:   3'- gGUCGagGCUGG---CGGAGCUgGCGCac -5'
23875 5' -60.6 NC_005262.1 + 14072 0.71 0.250548
Target:  5'- gCGGCUUCGGCCGCCgguUCG-CCGCc-- -3'
miRNA:   3'- gGUCGAGGCUGGCGG---AGCuGGCGcac -5'
23875 5' -60.6 NC_005262.1 + 15338 0.66 0.480035
Target:  5'- aCAGCUUCGACCaGUCgcaGcCCGCGg- -3'
miRNA:   3'- gGUCGAGGCUGG-CGGag-CuGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 16294 0.66 0.509238
Target:  5'- gCC-GCUCgCGGCgUGCaaccgaUCGACCGCGUu -3'
miRNA:   3'- -GGuCGAG-GCUG-GCGg-----AGCUGGCGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.