miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23875 5' -60.6 NC_005262.1 + 63726 0.69 0.34833
Target:  5'- aCguGCgugaCGugUGCCUCGAgCCGCGUc -3'
miRNA:   3'- -GguCGag--GCugGCGGAGCU-GGCGCAc -5'
23875 5' -60.6 NC_005262.1 + 63590 0.72 0.227108
Target:  5'- uCUGGCUCCG-CCGCCcCcGCCgGCGUGg -3'
miRNA:   3'- -GGUCGAGGCuGGCGGaGcUGG-CGCAC- -5'
23875 5' -60.6 NC_005262.1 + 60022 0.66 0.518146
Target:  5'- aCCGGCUCCGuucucAUCGUcgaagggCUCGAUCGCcUGa -3'
miRNA:   3'- -GGUCGAGGC-----UGGCG-------GAGCUGGCGcAC- -5'
23875 5' -60.6 NC_005262.1 + 59137 0.7 0.296319
Target:  5'- aCCGGC-CgGGCCGCgUCG-CCGCGc- -3'
miRNA:   3'- -GGUCGaGgCUGGCGgAGCuGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 59010 0.66 0.499418
Target:  5'- --cGCUUCGACCGUCUgcaaGCCGCGg- -3'
miRNA:   3'- gguCGAGGCUGGCGGAgc--UGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 58973 0.67 0.451674
Target:  5'- gCCGGCcgCCGGCgGCCUCacgccucCCGCGc- -3'
miRNA:   3'- -GGUCGa-GGCUGgCGGAGcu-----GGCGCac -5'
23875 5' -60.6 NC_005262.1 + 58493 1.1 0.000413
Target:  5'- gCCAGCUCCGACCGCCUCGACCGCGUGa -3'
miRNA:   3'- -GGUCGAGGCUGGCGGAGCUGGCGCAC- -5'
23875 5' -60.6 NC_005262.1 + 56431 0.66 0.528115
Target:  5'- aCGGC-CCGACCGUCguggCGACgccuaagCGCGg- -3'
miRNA:   3'- gGUCGaGGCUGGCGGa---GCUG-------GCGCac -5'
23875 5' -60.6 NC_005262.1 + 54618 0.66 0.528115
Target:  5'- aUCuGCgCCGACCGCCaugCGugaaggcGCCGgGUGa -3'
miRNA:   3'- -GGuCGaGGCUGGCGGa--GC-------UGGCgCAC- -5'
23875 5' -60.6 NC_005262.1 + 53705 0.66 0.539162
Target:  5'- gCAGaacCCGGCCGCgUCGaagGCCGUGg- -3'
miRNA:   3'- gGUCga-GGCUGGCGgAGC---UGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 52775 0.69 0.356272
Target:  5'- aCGGCaucuuccCCGACCGCUaCGGCCGCu-- -3'
miRNA:   3'- gGUCGa------GGCUGGCGGaGCUGGCGcac -5'
23875 5' -60.6 NC_005262.1 + 52716 0.67 0.461028
Target:  5'- gCCAGCg--GGCCGCCcuUUGGCCGCu-- -3'
miRNA:   3'- -GGUCGaggCUGGCGG--AGCUGGCGcac -5'
23875 5' -60.6 NC_005262.1 + 51905 0.68 0.389292
Target:  5'- aCGGCaCCGACCGCUUCGcCgGCa-- -3'
miRNA:   3'- gGUCGaGGCUGGCGGAGCuGgCGcac -5'
23875 5' -60.6 NC_005262.1 + 51385 0.68 0.415338
Target:  5'- gCCGGCcaaGGCCGCgCcUGACCGUGUGc -3'
miRNA:   3'- -GGUCGaggCUGGCG-GaGCUGGCGCAC- -5'
23875 5' -60.6 NC_005262.1 + 51376 0.66 0.519139
Target:  5'- aUCGGCUCgGcuACCGUCUCGAUCGaCa-- -3'
miRNA:   3'- -GGUCGAGgC--UGGCGGAGCUGGC-Gcac -5'
23875 5' -60.6 NC_005262.1 + 51358 0.66 0.539162
Target:  5'- gCAGCUCgGcACCGCgC-CGuCCGCGa- -3'
miRNA:   3'- gGUCGAGgC-UGGCG-GaGCuGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 51284 0.66 0.539162
Target:  5'- aCCGGCcgCCGGCUGCUgCGcauGCCGCu-- -3'
miRNA:   3'- -GGUCGa-GGCUGGCGGaGC---UGGCGcac -5'
23875 5' -60.6 NC_005262.1 + 49775 0.71 0.244507
Target:  5'- -aGGCUCCGGCCGCU---GCCGCGc- -3'
miRNA:   3'- ggUCGAGGCUGGCGGagcUGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 49281 0.66 0.509238
Target:  5'- gCCAuGCUguugCCGAUCGCCUUGuAgCGCGg- -3'
miRNA:   3'- -GGU-CGA----GGCUGGCGGAGC-UgGCGCac -5'
23875 5' -60.6 NC_005262.1 + 49204 0.68 0.414453
Target:  5'- uCCGGCaugCUGGCCgagggcgGCCUCGGCgGCGc- -3'
miRNA:   3'- -GGUCGa--GGCUGG-------CGGAGCUGgCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.