miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23875 5' -60.6 NC_005262.1 + 28080 0.68 0.372533
Target:  5'- gCCGGCUCgacauggaCGACUGCCgguacaUCuuCCGCGUGa -3'
miRNA:   3'- -GGUCGAG--------GCUGGCGG------AGcuGGCGCAC- -5'
23875 5' -60.6 NC_005262.1 + 22130 0.7 0.303365
Target:  5'- gCCGGCaaucgUCUGGCCGCCgCGGCUGCc-- -3'
miRNA:   3'- -GGUCG-----AGGCUGGCGGaGCUGGCGcac -5'
23875 5' -60.6 NC_005262.1 + 32951 0.69 0.340516
Target:  5'- --cGCUCCGACCGgCaaccaccguUCGAUCgGCGUGa -3'
miRNA:   3'- gguCGAGGCUGGCgG---------AGCUGG-CGCAC- -5'
23875 5' -60.6 NC_005262.1 + 18735 0.69 0.34833
Target:  5'- cUCAGCUUCGGCgCGgCUCGGCgCGuCGUa -3'
miRNA:   3'- -GGUCGAGGCUG-GCgGAGCUG-GC-GCAc -5'
23875 5' -60.6 NC_005262.1 + 41847 0.69 0.34833
Target:  5'- aCCcuCUCUGACCGCCUUG--CGUGUGg -3'
miRNA:   3'- -GGucGAGGCUGGCGGAGCugGCGCAC- -5'
23875 5' -60.6 NC_005262.1 + 63726 0.69 0.34833
Target:  5'- aCguGCgugaCGugUGCCUCGAgCCGCGUc -3'
miRNA:   3'- -GguCGag--GCugGCGGAGCU-GGCGCAc -5'
23875 5' -60.6 NC_005262.1 + 18899 0.69 0.351491
Target:  5'- uCCAGUcCCGACCcacggccuucucuugGuCCUUGGCCaGCGUGa -3'
miRNA:   3'- -GGUCGaGGCUGG---------------C-GGAGCUGG-CGCAC- -5'
23875 5' -60.6 NC_005262.1 + 35909 0.69 0.356272
Target:  5'- gCCGGCacagugUCGAUgGCCUCGAcuuugccuaCCGUGUGa -3'
miRNA:   3'- -GGUCGa-----GGCUGgCGGAGCU---------GGCGCAC- -5'
23875 5' -60.6 NC_005262.1 + 52775 0.69 0.356272
Target:  5'- aCGGCaucuuccCCGACCGCUaCGGCCGCu-- -3'
miRNA:   3'- gGUCGa------GGCUGGCGGaGCUGGCGcac -5'
23875 5' -60.6 NC_005262.1 + 4873 0.7 0.302654
Target:  5'- gCAGCUugCCGAgCGCCgacUCGACCugcuucgGCGUGa -3'
miRNA:   3'- gGUCGA--GGCUgGCGG---AGCUGG-------CGCAC- -5'
23875 5' -60.6 NC_005262.1 + 59137 0.7 0.296319
Target:  5'- aCCGGC-CgGGCCGCgUCG-CCGCGc- -3'
miRNA:   3'- -GGUCGaGgCUGGCGgAGCuGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 20445 0.7 0.282611
Target:  5'- aCGGUUCCGGCa-CCgUCG-CCGCGUGg -3'
miRNA:   3'- gGUCGAGGCUGgcGG-AGCuGGCGCAC- -5'
23875 5' -60.6 NC_005262.1 + 25257 0.73 0.195452
Target:  5'- gCCGGCUCCugcGCCGCCUCuggcACCGCa-- -3'
miRNA:   3'- -GGUCGAGGc--UGGCGGAGc---UGGCGcac -5'
23875 5' -60.6 NC_005262.1 + 6875 0.73 0.200446
Target:  5'- cUCGGCgaugCCGGCCGCgaucgcguuUUCGAgCCGCGUGc -3'
miRNA:   3'- -GGUCGa---GGCUGGCG---------GAGCU-GGCGCAC- -5'
23875 5' -60.6 NC_005262.1 + 22683 0.72 0.210769
Target:  5'- aCCAGUgcgCaGACgCGCCUCGACCGCc-- -3'
miRNA:   3'- -GGUCGa--GgCUG-GCGGAGCUGGCGcac -5'
23875 5' -60.6 NC_005262.1 + 18404 0.72 0.216099
Target:  5'- aCCGGCuUCCGAgCGCCUCaauGAgCGCGa- -3'
miRNA:   3'- -GGUCG-AGGCUgGCGGAG---CUgGCGCac -5'
23875 5' -60.6 NC_005262.1 + 63590 0.72 0.227108
Target:  5'- uCUGGCUCCG-CCGCCcCcGCCgGCGUGg -3'
miRNA:   3'- -GGUCGAGGCuGGCGGaGcUGG-CGCAC- -5'
23875 5' -60.6 NC_005262.1 + 46539 0.72 0.227108
Target:  5'- cCCAGCgcggcgCCGGCCGCCgCucCCGCGa- -3'
miRNA:   3'- -GGUCGa-----GGCUGGCGGaGcuGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 49775 0.71 0.244507
Target:  5'- -aGGCUCCGGCCGCU---GCCGCGc- -3'
miRNA:   3'- ggUCGAGGCUGGCGGagcUGGCGCac -5'
23875 5' -60.6 NC_005262.1 + 12959 0.71 0.275948
Target:  5'- aCGGCaucgCCGACCGCUcggcgucgaCGACCGCGa- -3'
miRNA:   3'- gGUCGa---GGCUGGCGGa--------GCUGGCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.