Results 1 - 20 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23875 | 5' | -60.6 | NC_005262.1 | + | 30500 | 0.66 | 0.539162 |
Target: 5'- aCGGCUUCGG-CGCCcggCGugCGCGc- -3' miRNA: 3'- gGUCGAGGCUgGCGGa--GCugGCGCac -5' |
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23875 | 5' | -60.6 | NC_005262.1 | + | 17400 | 0.67 | 0.464798 |
Target: 5'- cCCAGC-CCGAcgaggcgcgccuguuCgGCCUUGAUUGCGUc -3' miRNA: 3'- -GGUCGaGGCU---------------GgCGGAGCUGGCGCAc -5' |
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23875 | 5' | -60.6 | NC_005262.1 | + | 515 | 0.67 | 0.461028 |
Target: 5'- gCCAGCagCCGGCCGUCaagcaGGCgGCGg- -3' miRNA: 3'- -GGUCGa-GGCUGGCGGag---CUGgCGCac -5' |
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23875 | 5' | -60.6 | NC_005262.1 | + | 58493 | 1.1 | 0.000413 |
Target: 5'- gCCAGCUCCGACCGCCUCGACCGCGUGa -3' miRNA: 3'- -GGUCGAGGCUGGCGGAGCUGGCGCAC- -5' |
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23875 | 5' | -60.6 | NC_005262.1 | + | 46640 | 0.66 | 0.519139 |
Target: 5'- gCGGCcuugCCGGCCuUCUCGAUUGCGa- -3' miRNA: 3'- gGUCGa---GGCUGGcGGAGCUGGCGCac -5' |
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23875 | 5' | -60.6 | NC_005262.1 | + | 60022 | 0.66 | 0.518146 |
Target: 5'- aCCGGCUCCGuucucAUCGUcgaagggCUCGAUCGCcUGa -3' miRNA: 3'- -GGUCGAGGC-----UGGCG-------GAGCUGGCGcAC- -5' |
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23875 | 5' | -60.6 | NC_005262.1 | + | 11440 | 0.66 | 0.509238 |
Target: 5'- uCCAGCgucCCGuCCGCCUucauccggCGAUaCGCGUc -3' miRNA: 3'- -GGUCGa--GGCuGGCGGA--------GCUG-GCGCAc -5' |
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23875 | 5' | -60.6 | NC_005262.1 | + | 29613 | 0.66 | 0.489682 |
Target: 5'- gCAGCUCgGAaugcagCGUCUCGACCuuCGUGc -3' miRNA: 3'- gGUCGAGgCUg-----GCGGAGCUGGc-GCAC- -5' |
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23875 | 5' | -60.6 | NC_005262.1 | + | 18010 | 0.66 | 0.480035 |
Target: 5'- aUCAGCacgCCG-CCGCCcuUCG-CCGCGa- -3' miRNA: 3'- -GGUCGa--GGCuGGCGG--AGCuGGCGCac -5' |
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23875 | 5' | -60.6 | NC_005262.1 | + | 46397 | 0.67 | 0.468584 |
Target: 5'- cCCAGCgucucggcauugUCGGCCGCCgagUCGACCgGCa-- -3' miRNA: 3'- -GGUCGa-----------GGCUGGCGG---AGCUGG-CGcac -5' |
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23875 | 5' | -60.6 | NC_005262.1 | + | 29050 | 0.67 | 0.470483 |
Target: 5'- gCCGGCa-CGACgCGCaccguguucggCUCGACCuGCGUGa -3' miRNA: 3'- -GGUCGagGCUG-GCG-----------GAGCUGG-CGCAC- -5' |
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23875 | 5' | -60.6 | NC_005262.1 | + | 41510 | 0.66 | 0.483883 |
Target: 5'- gCCAGCUCgGGCCacucucugcggggacGUauggCGACgGCGUGa -3' miRNA: 3'- -GGUCGAGgCUGG---------------CGga--GCUGgCGCAC- -5' |
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23875 | 5' | -60.6 | NC_005262.1 | + | 54618 | 0.66 | 0.528115 |
Target: 5'- aUCuGCgCCGACCGCCaugCGugaaggcGCCGgGUGa -3' miRNA: 3'- -GGuCGaGGCUGGCGGa--GC-------UGGCgCAC- -5' |
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23875 | 5' | -60.6 | NC_005262.1 | + | 4670 | 0.67 | 0.470483 |
Target: 5'- gCGGC-CCGGCCgguucGCCUCGG-CGCGg- -3' miRNA: 3'- gGUCGaGGCUGG-----CGGAGCUgGCGCac -5' |
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23875 | 5' | -60.6 | NC_005262.1 | + | 56431 | 0.66 | 0.528115 |
Target: 5'- aCGGC-CCGACCGUCguggCGACgccuaagCGCGg- -3' miRNA: 3'- gGUCGaGGCUGGCGGa---GCUG-------GCGCac -5' |
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23875 | 5' | -60.6 | NC_005262.1 | + | 13494 | 0.66 | 0.489682 |
Target: 5'- gCCGGCUCCucaauccgcgcGGCCGUcacgggCUCGGCCgGCGc- -3' miRNA: 3'- -GGUCGAGG-----------CUGGCG------GAGCUGG-CGCac -5' |
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23875 | 5' | -60.6 | NC_005262.1 | + | 39595 | 0.67 | 0.470483 |
Target: 5'- gCAGCgUCgCGgcuGCCGCCUCGGgCGUGa- -3' miRNA: 3'- gGUCG-AG-GC---UGGCGGAGCUgGCGCac -5' |
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23875 | 5' | -60.6 | NC_005262.1 | + | 52716 | 0.67 | 0.461028 |
Target: 5'- gCCAGCg--GGCCGCCcuUUGGCCGCu-- -3' miRNA: 3'- -GGUCGaggCUGGCGG--AGCUGGCGcac -5' |
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23875 | 5' | -60.6 | NC_005262.1 | + | 51376 | 0.66 | 0.519139 |
Target: 5'- aUCGGCUCgGcuACCGUCUCGAUCGaCa-- -3' miRNA: 3'- -GGUCGAGgC--UGGCGGAGCUGGC-Gcac -5' |
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23875 | 5' | -60.6 | NC_005262.1 | + | 49281 | 0.66 | 0.509238 |
Target: 5'- gCCAuGCUguugCCGAUCGCCUUGuAgCGCGg- -3' miRNA: 3'- -GGU-CGA----GGCUGGCGGAGC-UgGCGCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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