miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23877 3' -52.9 NC_005262.1 + 57917 1.11 0.001916
Target:  5'- aUCGACGUCGAUCGCUUCAUCCGCACGg -3'
miRNA:   3'- -AGCUGCAGCUAGCGAAGUAGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 13452 0.77 0.31461
Target:  5'- gCGGuCGUCGcgggCGCUUCGUCCuGCGCGg -3'
miRNA:   3'- aGCU-GCAGCua--GCGAAGUAGG-CGUGC- -5'
23877 3' -52.9 NC_005262.1 + 14061 0.73 0.505677
Target:  5'- cCGGCGUCGGUgCgGCUUCggCCGC-CGg -3'
miRNA:   3'- aGCUGCAGCUA-G-CGAAGuaGGCGuGC- -5'
23877 3' -52.9 NC_005262.1 + 31515 0.73 0.526526
Target:  5'- gUCGuACuUCGAacagCGCUUCAUCgGCACGu -3'
miRNA:   3'- -AGC-UGcAGCUa---GCGAAGUAGgCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 40376 0.73 0.536013
Target:  5'- gCGACGUCGAcggccugUCuGCcgCGUUCGCGCGg -3'
miRNA:   3'- aGCUGCAGCU-------AG-CGaaGUAGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 45267 0.72 0.569112
Target:  5'- cUCGgaGCGUCGAaCGCgaacuUCCGCGCGa -3'
miRNA:   3'- -AGC--UGCAGCUaGCGaagu-AGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 26891 0.72 0.579904
Target:  5'- aCGACGggaaguagagcUUGAgcgucCGCUUCGUCUGCGCGc -3'
miRNA:   3'- aGCUGC-----------AGCUa----GCGAAGUAGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 11295 0.72 0.590737
Target:  5'- cUCGGCcauGUUGAUCGCcugCGUCCGCuucaGCGg -3'
miRNA:   3'- -AGCUG---CAGCUAGCGaa-GUAGGCG----UGC- -5'
23877 3' -52.9 NC_005262.1 + 16382 0.72 0.601605
Target:  5'- -gGGCGUCGAgcUUGCUUU-UCUGCGCGu -3'
miRNA:   3'- agCUGCAGCU--AGCGAAGuAGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 42038 0.72 0.601605
Target:  5'- gCGACGUUGA-CGCgugCcgCUGCGCGa -3'
miRNA:   3'- aGCUGCAGCUaGCGaa-GuaGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 30924 0.71 0.612499
Target:  5'- uUCGACGcggCGAaCGC-UCGgcgCCGCACGu -3'
miRNA:   3'- -AGCUGCa--GCUaGCGaAGUa--GGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 11919 0.7 0.677882
Target:  5'- gCGGCGUCGGcucggucgugcUCGCgUCGUUCGCGgCGc -3'
miRNA:   3'- aGCUGCAGCU-----------AGCGaAGUAGGCGU-GC- -5'
23877 3' -52.9 NC_005262.1 + 12975 0.7 0.68869
Target:  5'- cUCGGCGUCGAcgacCGCgac--CCGCGCGu -3'
miRNA:   3'- -AGCUGCAGCUa---GCGaaguaGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 10205 0.7 0.68869
Target:  5'- gCGACG-CGGUUGCgaaCAUCCGUcucGCGa -3'
miRNA:   3'- aGCUGCaGCUAGCGaa-GUAGGCG---UGC- -5'
23877 3' -52.9 NC_005262.1 + 57662 0.7 0.699444
Target:  5'- aUCGGCGgcaCGAUCGaCUUC--UCGCGCGc -3'
miRNA:   3'- -AGCUGCa--GCUAGC-GAAGuaGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 57154 0.7 0.699444
Target:  5'- gCGACG-CGAUCGaagcgCcgCCGCACa -3'
miRNA:   3'- aGCUGCaGCUAGCgaa--GuaGGCGUGc -5'
23877 3' -52.9 NC_005262.1 + 52426 0.7 0.699444
Target:  5'- gCGaACGUCGugCGCUUCAUcgucgacgugCCGCGCGc -3'
miRNA:   3'- aGC-UGCAGCuaGCGAAGUA----------GGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 12664 0.7 0.710134
Target:  5'- aCGGCGUCGAgCGCcuugUCGaCCgGCGCGu -3'
miRNA:   3'- aGCUGCAGCUaGCGa---AGUaGG-CGUGC- -5'
23877 3' -52.9 NC_005262.1 + 53071 0.69 0.720749
Target:  5'- cCGGCG-CGAUCGCgaagcugcugUAUCCGCAg- -3'
miRNA:   3'- aGCUGCaGCUAGCGaa--------GUAGGCGUgc -5'
23877 3' -52.9 NC_005262.1 + 33250 0.69 0.720749
Target:  5'- gCGcACGUCGAgCGCUUCcugucgAUCCGCGa- -3'
miRNA:   3'- aGC-UGCAGCUaGCGAAG------UAGGCGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.