miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23877 3' -52.9 NC_005262.1 + 2331 0.68 0.820298
Target:  5'- -aGAUGUCGucuagCGCUUCgccGUCCGC-CGc -3'
miRNA:   3'- agCUGCAGCua---GCGAAG---UAGGCGuGC- -5'
23877 3' -52.9 NC_005262.1 + 2831 0.66 0.89376
Target:  5'- cUCGACcUCGuuugcgCGCUggCGUgcCCGCACGa -3'
miRNA:   3'- -AGCUGcAGCua----GCGAa-GUA--GGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 3355 0.66 0.89376
Target:  5'- -aGGCGcagcgcguucUCGGUCGCUUgGUUCGCGa- -3'
miRNA:   3'- agCUGC----------AGCUAGCGAAgUAGGCGUgc -5'
23877 3' -52.9 NC_005262.1 + 3419 0.67 0.863449
Target:  5'- aCGGCGagcCGcAUCGCUUCAg-CGCGCu -3'
miRNA:   3'- aGCUGCa--GC-UAGCGAAGUagGCGUGc -5'
23877 3' -52.9 NC_005262.1 + 3700 0.66 0.899332
Target:  5'- cCGACcauGUUGAUCGUgcccgucagcgCGUCgCGCGCGg -3'
miRNA:   3'- aGCUG---CAGCUAGCGaa---------GUAG-GCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 4404 0.67 0.838206
Target:  5'- gCGAUGUCGcgCGCcug--CUGCGCGa -3'
miRNA:   3'- aGCUGCAGCuaGCGaaguaGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 4530 0.68 0.782227
Target:  5'- gCGACG-CGcUCGUUUCGcUCCuGCGCGu -3'
miRNA:   3'- aGCUGCaGCuAGCGAAGU-AGG-CGUGC- -5'
23877 3' -52.9 NC_005262.1 + 4908 0.67 0.863449
Target:  5'- gUGACGUCGGgcaguUUGCUcUCGaugucCCGCACGu -3'
miRNA:   3'- aGCUGCAGCU-----AGCGA-AGUa----GGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 5229 0.66 0.89376
Target:  5'- cCGGCGUgcCGAUCaGCUUCucgCCGC-Cu -3'
miRNA:   3'- aGCUGCA--GCUAG-CGAAGua-GGCGuGc -5'
23877 3' -52.9 NC_005262.1 + 7638 0.66 0.868248
Target:  5'- aCGGCGUCGAUCaucugguucagcuuGCUguucgggUCGcUCgGCGCGg -3'
miRNA:   3'- aGCUGCAGCUAG--------------CGA-------AGU-AGgCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 7700 0.66 0.877584
Target:  5'- aCGcAUGUCGAUCGCcgagaaacggcCGUCCGCGa- -3'
miRNA:   3'- aGC-UGCAGCUAGCGaa---------GUAGGCGUgc -5'
23877 3' -52.9 NC_005262.1 + 9295 0.69 0.752028
Target:  5'- gUGAUGUCGGUCgggcccagcgGCUUCggCUGCACc -3'
miRNA:   3'- aGCUGCAGCUAG----------CGAAGuaGGCGUGc -5'
23877 3' -52.9 NC_005262.1 + 9942 0.66 0.871399
Target:  5'- cUUGAgCG-CGAUCuGCUUgcCGUCCGCGCc -3'
miRNA:   3'- -AGCU-GCaGCUAG-CGAA--GUAGGCGUGc -5'
23877 3' -52.9 NC_005262.1 + 10205 0.7 0.68869
Target:  5'- gCGACG-CGGUUGCgaaCAUCCGUcucGCGa -3'
miRNA:   3'- aGCUGCaGCUAGCGaa-GUAGGCG---UGC- -5'
23877 3' -52.9 NC_005262.1 + 11295 0.72 0.590737
Target:  5'- cUCGGCcauGUUGAUCGCcugCGUCCGCuucaGCGg -3'
miRNA:   3'- -AGCUG---CAGCUAGCGaa-GUAGGCG----UGC- -5'
23877 3' -52.9 NC_005262.1 + 11693 0.67 0.838206
Target:  5'- aCGGCGUCGc-CGaggUCGUCCGuCAUGg -3'
miRNA:   3'- aGCUGCAGCuaGCga-AGUAGGC-GUGC- -5'
23877 3' -52.9 NC_005262.1 + 11919 0.7 0.677882
Target:  5'- gCGGCGUCGGcucggucgugcUCGCgUCGUUCGCGgCGc -3'
miRNA:   3'- aGCUGCAGCU-----------AGCGaAGUAGGCGU-GC- -5'
23877 3' -52.9 NC_005262.1 + 11965 0.68 0.782227
Target:  5'- aUCGACGgCGAUgCGUgaUCGUCaGCACGa -3'
miRNA:   3'- -AGCUGCaGCUA-GCGa-AGUAGgCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 12452 0.66 0.900699
Target:  5'- aCGAuccuCGUCGAgacgUCGC-UCAcggggcgCCGCGCGg -3'
miRNA:   3'- aGCU----GCAGCU----AGCGaAGUa------GGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 12664 0.7 0.710134
Target:  5'- aCGGCGUCGAgCGCcuugUCGaCCgGCGCGu -3'
miRNA:   3'- aGCUGCAGCUaGCGa---AGUaGG-CGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.