Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23877 | 3' | -52.9 | NC_005262.1 | + | 12975 | 0.7 | 0.68869 |
Target: 5'- cUCGGCGUCGAcgacCGCgac--CCGCGCGu -3' miRNA: 3'- -AGCUGCAGCUa---GCGaaguaGGCGUGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 13452 | 0.77 | 0.31461 |
Target: 5'- gCGGuCGUCGcgggCGCUUCGUCCuGCGCGg -3' miRNA: 3'- aGCU-GCAGCua--GCGAAGUAGG-CGUGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 13580 | 0.66 | 0.900016 |
Target: 5'- gCGGCGuUCGGUCGUgagcaucUUCGUCCaGC-CGc -3' miRNA: 3'- aGCUGC-AGCUAGCG-------AAGUAGG-CGuGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 14061 | 0.73 | 0.505677 |
Target: 5'- cCGGCGUCGGUgCgGCUUCggCCGC-CGg -3' miRNA: 3'- aGCUGCAGCUA-G-CGAAGuaGGCGuGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 15723 | 0.68 | 0.801611 |
Target: 5'- cUCGACGUgGcgCGCU-CAUUCGCu-- -3' miRNA: 3'- -AGCUGCAgCuaGCGAaGUAGGCGugc -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 15870 | 0.69 | 0.731277 |
Target: 5'- uUCGAUGUCGccggCGCUcggCGUCUGCAa- -3' miRNA: 3'- -AGCUGCAGCua--GCGAa--GUAGGCGUgc -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 15876 | 0.68 | 0.811047 |
Target: 5'- cUCGACG-CGAUggCGCUgauccgccgCGUgCGCGCGa -3' miRNA: 3'- -AGCUGCaGCUA--GCGAa--------GUAgGCGUGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 16382 | 0.72 | 0.601605 |
Target: 5'- -gGGCGUCGAgcUUGCUUU-UCUGCGCGu -3' miRNA: 3'- agCUGCAGCU--AGCGAAGuAGGCGUGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 17869 | 0.66 | 0.89376 |
Target: 5'- cUCGACGUagcccgacuUGAUCgGCgcgcgCAUCCGguCGg -3' miRNA: 3'- -AGCUGCA---------GCUAG-CGaa---GUAGGCguGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 18628 | 0.69 | 0.76223 |
Target: 5'- --cAUGUUGAUCGC---GUCCGCACGc -3' miRNA: 3'- agcUGCAGCUAGCGaagUAGGCGUGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 20081 | 0.67 | 0.855262 |
Target: 5'- uUCGACcuucuuGUCGGUgagCGCgUCG-CCGCGCGa -3' miRNA: 3'- -AGCUG------CAGCUA---GCGaAGUaGGCGUGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 22383 | 0.66 | 0.871399 |
Target: 5'- cCGGCG-CgGAUCGCgaUCAUCC-CGCGu -3' miRNA: 3'- aGCUGCaG-CUAGCGa-AGUAGGcGUGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 24329 | 0.66 | 0.88656 |
Target: 5'- gUCGGCG-CGAUCgacaugcgGCUcugCGUCgGCGCGc -3' miRNA: 3'- -AGCUGCaGCUAG--------CGAa--GUAGgCGUGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 25527 | 0.67 | 0.863449 |
Target: 5'- uUCGACGUCaucaaaucgaGAUCGaauauUCCGCGCu -3' miRNA: 3'- -AGCUGCAG----------CUAGCgaaguAGGCGUGc -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 26891 | 0.72 | 0.579904 |
Target: 5'- aCGACGggaaguagagcUUGAgcgucCGCUUCGUCUGCGCGc -3' miRNA: 3'- aGCUGC-----------AGCUa----GCGAAGUAGGCGUGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 26896 | 0.69 | 0.741707 |
Target: 5'- cCGgcGCGUCcGUUGUcgaUCAUCCGCGCGa -3' miRNA: 3'- aGC--UGCAGcUAGCGa--AGUAGGCGUGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 27501 | 0.66 | 0.89376 |
Target: 5'- cCGAaGUCGAccgagguguUCGCgUCG-CCGCGCGc -3' miRNA: 3'- aGCUgCAGCU---------AGCGaAGUaGGCGUGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 28370 | 0.69 | 0.76223 |
Target: 5'- cCGACGUCGAacacgaacacgUCGCcgggcuggagCGUgCGCGCGg -3' miRNA: 3'- aGCUGCAGCU-----------AGCGaa--------GUAgGCGUGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 28596 | 0.69 | 0.76223 |
Target: 5'- aCGGCGU-GAUcCGCUUCAUgCGCGg- -3' miRNA: 3'- aGCUGCAgCUA-GCGAAGUAgGCGUgc -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 29289 | 0.67 | 0.838206 |
Target: 5'- cCG-CGUCGucucgcagaaGUCGCgcgCcgCCGCGCGg -3' miRNA: 3'- aGCuGCAGC----------UAGCGaa-GuaGGCGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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