Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23877 | 3' | -52.9 | NC_005262.1 | + | 10205 | 0.7 | 0.68869 |
Target: 5'- gCGACG-CGGUUGCgaaCAUCCGUcucGCGa -3' miRNA: 3'- aGCUGCaGCUAGCGaa-GUAGGCG---UGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 12975 | 0.7 | 0.68869 |
Target: 5'- cUCGGCGUCGAcgacCGCgac--CCGCGCGu -3' miRNA: 3'- -AGCUGCAGCUa---GCGaaguaGGCGUGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 57662 | 0.7 | 0.699444 |
Target: 5'- aUCGGCGgcaCGAUCGaCUUC--UCGCGCGc -3' miRNA: 3'- -AGCUGCa--GCUAGC-GAAGuaGGCGUGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 33250 | 0.69 | 0.720749 |
Target: 5'- gCGcACGUCGAgCGCUUCcugucgAUCCGCGa- -3' miRNA: 3'- aGC-UGCAGCUaGCGAAG------UAGGCGUgc -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 53071 | 0.69 | 0.720749 |
Target: 5'- cCGGCG-CGAUCGCgaagcugcugUAUCCGCAg- -3' miRNA: 3'- aGCUGCaGCUAGCGaa--------GUAGGCGUgc -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 26896 | 0.69 | 0.741707 |
Target: 5'- cCGgcGCGUCcGUUGUcgaUCAUCCGCGCGa -3' miRNA: 3'- aGC--UGCAGcUAGCGa--AGUAGGCGUGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 32837 | 0.68 | 0.782227 |
Target: 5'- gCGACGUCGGcgacaagGUUUCGgcCCGCACGu -3' miRNA: 3'- aGCUGCAGCUag-----CGAAGUa-GGCGUGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 31586 | 0.68 | 0.7723 |
Target: 5'- cCGACGccggCGAUCGCaUCAccuucgaccucUCCGUGCa -3' miRNA: 3'- aGCUGCa---GCUAGCGaAGU-----------AGGCGUGc -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 34478 | 0.68 | 0.7723 |
Target: 5'- aCGGCGuUCGA--GCa-CAUCCGCGCGg -3' miRNA: 3'- aGCUGC-AGCUagCGaaGUAGGCGUGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 28596 | 0.69 | 0.76223 |
Target: 5'- aCGGCGU-GAUcCGCUUCAUgCGCGg- -3' miRNA: 3'- aGCUGCAgCUA-GCGAAGUAgGCGUgc -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 43872 | 0.69 | 0.741707 |
Target: 5'- cUCGGCG-CGAUCGCgcgCAUggCCGaCAUGa -3' miRNA: 3'- -AGCUGCaGCUAGCGaa-GUA--GGC-GUGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 42910 | 0.69 | 0.741707 |
Target: 5'- aCGAuggcuCGUCG-UCGCgucgUCGUCCgGCGCGc -3' miRNA: 3'- aGCU-----GCAGCuAGCGa---AGUAGG-CGUGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 5229 | 0.66 | 0.89376 |
Target: 5'- cCGGCGUgcCGAUCaGCUUCucgCCGC-Cu -3' miRNA: 3'- aGCUGCA--GCUAG-CGAAGua-GGCGuGc -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 17869 | 0.66 | 0.89376 |
Target: 5'- cUCGACGUagcccgacuUGAUCgGCgcgcgCAUCCGguCGg -3' miRNA: 3'- -AGCUGCA---------GCUAG-CGaa---GUAGGCguGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 27501 | 0.66 | 0.89376 |
Target: 5'- cCGAaGUCGAccgagguguUCGCgUCG-CCGCGCGc -3' miRNA: 3'- aGCUgCAGCU---------AGCGaAGUaGGCGUGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 3700 | 0.66 | 0.899332 |
Target: 5'- cCGACcauGUUGAUCGUgcccgucagcgCGUCgCGCGCGg -3' miRNA: 3'- aGCUG---CAGCUAGCGaa---------GUAG-GCGUGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 13580 | 0.66 | 0.900016 |
Target: 5'- gCGGCGuUCGGUCGUgagcaucUUCGUCCaGC-CGc -3' miRNA: 3'- aGCUGC-AGCUAGCG-------AAGUAGG-CGuGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 40246 | 0.66 | 0.900699 |
Target: 5'- gCGGCGggCGGUUGgUcaGUCUGCGCGg -3' miRNA: 3'- aGCUGCa-GCUAGCgAagUAGGCGUGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 30496 | 0.66 | 0.900699 |
Target: 5'- cUCGACGgcuUCGG-CGCccggCGUgCGCGCGa -3' miRNA: 3'- -AGCUGC---AGCUaGCGaa--GUAgGCGUGC- -5' |
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23877 | 3' | -52.9 | NC_005262.1 | + | 57917 | 1.11 | 0.001916 |
Target: 5'- aUCGACGUCGAUCGCUUCAUCCGCACGg -3' miRNA: 3'- -AGCUGCAGCUAGCGAAGUAGGCGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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