miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23877 3' -52.9 NC_005262.1 + 49223 0.67 0.829354
Target:  5'- gCGGCcUCGGcggCGCgcaGUCCGCGCGc -3'
miRNA:   3'- aGCUGcAGCUa--GCGaagUAGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 34478 0.68 0.7723
Target:  5'- aCGGCGuUCGA--GCa-CAUCCGCGCGg -3'
miRNA:   3'- aGCUGC-AGCUagCGaaGUAGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 31586 0.68 0.7723
Target:  5'- cCGACGccggCGAUCGCaUCAccuucgaccucUCCGUGCa -3'
miRNA:   3'- aGCUGCa---GCUAGCGaAGU-----------AGGCGUGc -5'
23877 3' -52.9 NC_005262.1 + 32837 0.68 0.782227
Target:  5'- gCGACGUCGGcgacaagGUUUCGgcCCGCACGu -3'
miRNA:   3'- aGCUGCAGCUag-----CGAAGUa-GGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 11965 0.68 0.782227
Target:  5'- aUCGACGgCGAUgCGUgaUCGUCaGCACGa -3'
miRNA:   3'- -AGCUGCaGCUA-GCGa-AGUAGgCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 15723 0.68 0.801611
Target:  5'- cUCGACGUgGcgCGCU-CAUUCGCu-- -3'
miRNA:   3'- -AGCUGCAgCuaGCGAaGUAGGCGugc -5'
23877 3' -52.9 NC_005262.1 + 58930 0.68 0.801611
Target:  5'- cCGAUGgCGcgCGCUUCucgGUCgGCGCGc -3'
miRNA:   3'- aGCUGCaGCuaGCGAAG---UAGgCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 15876 0.68 0.811047
Target:  5'- cUCGACG-CGAUggCGCUgauccgccgCGUgCGCGCGa -3'
miRNA:   3'- -AGCUGCaGCUA--GCGAa--------GUAgGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 42150 0.68 0.820298
Target:  5'- gCGGCGccgggccCGGUCGCggccgaUCGUCUGUACGu -3'
miRNA:   3'- aGCUGCa------GCUAGCGa-----AGUAGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 28596 0.69 0.76223
Target:  5'- aCGGCGU-GAUcCGCUUCAUgCGCGg- -3'
miRNA:   3'- aGCUGCAgCUA-GCGAAGUAgGCGUgc -5'
23877 3' -52.9 NC_005262.1 + 43872 0.69 0.741707
Target:  5'- cUCGGCG-CGAUCGCgcgCAUggCCGaCAUGa -3'
miRNA:   3'- -AGCUGCaGCUAGCGaa-GUA--GGC-GUGC- -5'
23877 3' -52.9 NC_005262.1 + 42910 0.69 0.741707
Target:  5'- aCGAuggcuCGUCG-UCGCgucgUCGUCCgGCGCGc -3'
miRNA:   3'- aGCU-----GCAGCuAGCGa---AGUAGG-CGUGC- -5'
23877 3' -52.9 NC_005262.1 + 40376 0.73 0.536013
Target:  5'- gCGACGUCGAcggccugUCuGCcgCGUUCGCGCGg -3'
miRNA:   3'- aGCUGCAGCU-------AG-CGaaGUAGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 45267 0.72 0.569112
Target:  5'- cUCGgaGCGUCGAaCGCgaacuUCCGCGCGa -3'
miRNA:   3'- -AGC--UGCAGCUaGCGaagu-AGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 10205 0.7 0.68869
Target:  5'- gCGACG-CGGUUGCgaaCAUCCGUcucGCGa -3'
miRNA:   3'- aGCUGCaGCUAGCGaa-GUAGGCG---UGC- -5'
23877 3' -52.9 NC_005262.1 + 12975 0.7 0.68869
Target:  5'- cUCGGCGUCGAcgacCGCgac--CCGCGCGu -3'
miRNA:   3'- -AGCUGCAGCUa---GCGaaguaGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 57662 0.7 0.699444
Target:  5'- aUCGGCGgcaCGAUCGaCUUC--UCGCGCGc -3'
miRNA:   3'- -AGCUGCa--GCUAGC-GAAGuaGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 33250 0.69 0.720749
Target:  5'- gCGcACGUCGAgCGCUUCcugucgAUCCGCGa- -3'
miRNA:   3'- aGC-UGCAGCUaGCGAAG------UAGGCGUgc -5'
23877 3' -52.9 NC_005262.1 + 53071 0.69 0.720749
Target:  5'- cCGGCG-CGAUCGCgaagcugcugUAUCCGCAg- -3'
miRNA:   3'- aGCUGCaGCUAGCGaa--------GUAGGCGUgc -5'
23877 3' -52.9 NC_005262.1 + 26896 0.69 0.741707
Target:  5'- cCGgcGCGUCcGUUGUcgaUCAUCCGCGCGa -3'
miRNA:   3'- aGC--UGCAGcUAGCGa--AGUAGGCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.