Results 1 - 20 of 78 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23877 | 3' | -52.9 | NC_005262.1 | + | 38751 | 0.66 | 0.900699 |
Target: 5'- cCGugGUgugCGAUCGUgUCGUgUCGCACu -3' miRNA: 3'- aGCugCA---GCUAGCGaAGUA-GGCGUGc -5' |
|||||||
23877 | 3' | -52.9 | NC_005262.1 | + | 32747 | 0.67 | 0.846845 |
Target: 5'- gUCGGCGUCGGUCaGCacCAgcaggcgguacuUCCGCuCGa -3' miRNA: 3'- -AGCUGCAGCUAG-CGaaGU------------AGGCGuGC- -5' |
|||||||
23877 | 3' | -52.9 | NC_005262.1 | + | 11693 | 0.67 | 0.838206 |
Target: 5'- aCGGCGUCGc-CGaggUCGUCCGuCAUGg -3' miRNA: 3'- aGCUGCAGCuaGCga-AGUAGGC-GUGC- -5' |
|||||||
23877 | 3' | -52.9 | NC_005262.1 | + | 57917 | 1.11 | 0.001916 |
Target: 5'- aUCGACGUCGAUCGCUUCAUCCGCACGg -3' miRNA: 3'- -AGCUGCAGCUAGCGAAGUAGGCGUGC- -5' |
|||||||
23877 | 3' | -52.9 | NC_005262.1 | + | 3700 | 0.66 | 0.899332 |
Target: 5'- cCGACcauGUUGAUCGUgcccgucagcgCGUCgCGCGCGg -3' miRNA: 3'- aGCUG---CAGCUAGCGaa---------GUAG-GCGUGC- -5' |
|||||||
23877 | 3' | -52.9 | NC_005262.1 | + | 27501 | 0.66 | 0.89376 |
Target: 5'- cCGAaGUCGAccgagguguUCGCgUCG-CCGCGCGc -3' miRNA: 3'- aGCUgCAGCU---------AGCGaAGUaGGCGUGC- -5' |
|||||||
23877 | 3' | -52.9 | NC_005262.1 | + | 5229 | 0.66 | 0.89376 |
Target: 5'- cCGGCGUgcCGAUCaGCUUCucgCCGC-Cu -3' miRNA: 3'- aGCUGCA--GCUAG-CGAAGua-GGCGuGc -5' |
|||||||
23877 | 3' | -52.9 | NC_005262.1 | + | 3355 | 0.66 | 0.89376 |
Target: 5'- -aGGCGcagcgcguucUCGGUCGCUUgGUUCGCGa- -3' miRNA: 3'- agCUGC----------AGCUAGCGAAgUAGGCGUgc -5' |
|||||||
23877 | 3' | -52.9 | NC_005262.1 | + | 9942 | 0.66 | 0.871399 |
Target: 5'- cUUGAgCG-CGAUCuGCUUgcCGUCCGCGCc -3' miRNA: 3'- -AGCU-GCaGCUAG-CGAA--GUAGGCGUGc -5' |
|||||||
23877 | 3' | -52.9 | NC_005262.1 | + | 37873 | 0.67 | 0.855262 |
Target: 5'- gUCGGCGUCGcgCGUggcgacguacCAUgCGCGCu -3' miRNA: 3'- -AGCUGCAGCuaGCGaa--------GUAgGCGUGc -5' |
|||||||
23877 | 3' | -52.9 | NC_005262.1 | + | 7638 | 0.66 | 0.868248 |
Target: 5'- aCGGCGUCGAUCaucugguucagcuuGCUguucgggUCGcUCgGCGCGg -3' miRNA: 3'- aGCUGCAGCUAG--------------CGA-------AGU-AGgCGUGC- -5' |
|||||||
23877 | 3' | -52.9 | NC_005262.1 | + | 7700 | 0.66 | 0.877584 |
Target: 5'- aCGcAUGUCGAUCGCcgagaaacggcCGUCCGCGa- -3' miRNA: 3'- aGC-UGCAGCUAGCGaa---------GUAGGCGUgc -5' |
|||||||
23877 | 3' | -52.9 | NC_005262.1 | + | 30496 | 0.66 | 0.900699 |
Target: 5'- cUCGACGgcuUCGG-CGCccggCGUgCGCGCGa -3' miRNA: 3'- -AGCUGC---AGCUaGCGaa--GUAgGCGUGC- -5' |
|||||||
23877 | 3' | -52.9 | NC_005262.1 | + | 25527 | 0.67 | 0.863449 |
Target: 5'- uUCGACGUCaucaaaucgaGAUCGaauauUCCGCGCu -3' miRNA: 3'- -AGCUGCAG----------CUAGCgaaguAGGCGUGc -5' |
|||||||
23877 | 3' | -52.9 | NC_005262.1 | + | 40246 | 0.66 | 0.900699 |
Target: 5'- gCGGCGggCGGUUGgUcaGUCUGCGCGg -3' miRNA: 3'- aGCUGCa-GCUAGCgAagUAGGCGUGC- -5' |
|||||||
23877 | 3' | -52.9 | NC_005262.1 | + | 48085 | 0.66 | 0.88656 |
Target: 5'- gCGccACGUCGAgcgcauagCGCUgcUCGUCCGUcucgGCGa -3' miRNA: 3'- aGC--UGCAGCUa-------GCGA--AGUAGGCG----UGC- -5' |
|||||||
23877 | 3' | -52.9 | NC_005262.1 | + | 20081 | 0.67 | 0.855262 |
Target: 5'- uUCGACcuucuuGUCGGUgagCGCgUCG-CCGCGCGa -3' miRNA: 3'- -AGCUG------CAGCUA---GCGaAGUaGGCGUGC- -5' |
|||||||
23877 | 3' | -52.9 | NC_005262.1 | + | 29289 | 0.67 | 0.838206 |
Target: 5'- cCG-CGUCGucucgcagaaGUCGCgcgCcgCCGCGCGg -3' miRNA: 3'- aGCuGCAGC----------UAGCGaa-GuaGGCGUGC- -5' |
|||||||
23877 | 3' | -52.9 | NC_005262.1 | + | 13580 | 0.66 | 0.900016 |
Target: 5'- gCGGCGuUCGGUCGUgagcaucUUCGUCCaGC-CGc -3' miRNA: 3'- aGCUGC-AGCUAGCG-------AAGUAGG-CGuGC- -5' |
|||||||
23877 | 3' | -52.9 | NC_005262.1 | + | 17869 | 0.66 | 0.89376 |
Target: 5'- cUCGACGUagcccgacuUGAUCgGCgcgcgCAUCCGguCGg -3' miRNA: 3'- -AGCUGCA---------GCUAG-CGaa---GUAGGCguGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home