miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23877 3' -52.9 NC_005262.1 + 63305 0.66 0.879105
Target:  5'- cUCGGCGUCGA-CGUggaacaCGCGCGc -3'
miRNA:   3'- -AGCUGCAGCUaGCGaaguagGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 60040 0.67 0.838206
Target:  5'- gUCGAagggcUCGAUCGCcugagCCGCGCGg -3'
miRNA:   3'- -AGCUgc---AGCUAGCGaaguaGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 58930 0.68 0.801611
Target:  5'- cCGAUGgCGcgCGCUUCucgGUCgGCGCGc -3'
miRNA:   3'- aGCUGCaGCuaGCGAAG---UAGgCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 57917 1.11 0.001916
Target:  5'- aUCGACGUCGAUCGCUUCAUCCGCACGg -3'
miRNA:   3'- -AGCUGCAGCUAGCGAAGUAGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 57662 0.7 0.699444
Target:  5'- aUCGGCGgcaCGAUCGaCUUC--UCGCGCGc -3'
miRNA:   3'- -AGCUGCa--GCUAGC-GAAGuaGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 57154 0.7 0.699444
Target:  5'- gCGACG-CGAUCGaagcgCcgCCGCACa -3'
miRNA:   3'- aGCUGCaGCUAGCgaa--GuaGGCGUGc -5'
23877 3' -52.9 NC_005262.1 + 56102 0.67 0.855262
Target:  5'- cUCGGCGaUCGAcaugCGUUUCGUcgacccgaCCGCGCc -3'
miRNA:   3'- -AGCUGC-AGCUa---GCGAAGUA--------GGCGUGc -5'
23877 3' -52.9 NC_005262.1 + 53071 0.69 0.720749
Target:  5'- cCGGCG-CGAUCGCgaagcugcugUAUCCGCAg- -3'
miRNA:   3'- aGCUGCaGCUAGCGaa--------GUAGGCGUgc -5'
23877 3' -52.9 NC_005262.1 + 52426 0.7 0.699444
Target:  5'- gCGaACGUCGugCGCUUCAUcgucgacgugCCGCGCGc -3'
miRNA:   3'- aGC-UGCAGCuaGCGAAGUA----------GGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 51354 0.68 0.820298
Target:  5'- cUCGACGagGAUCGUgcgccgCAUCgGCuCGg -3'
miRNA:   3'- -AGCUGCagCUAGCGaa----GUAGgCGuGC- -5'
23877 3' -52.9 NC_005262.1 + 51189 0.66 0.900699
Target:  5'- aCGACGcggCGGccCGCUggagCCGCGCGg -3'
miRNA:   3'- aGCUGCa--GCUa-GCGAaguaGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 49575 0.68 0.820298
Target:  5'- gCGugGUCGAcaUCGCgcccgccgUCAgugCCGCGUGg -3'
miRNA:   3'- aGCugCAGCU--AGCGa-------AGUa--GGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 49223 0.67 0.829354
Target:  5'- gCGGCcUCGGcggCGCgcaGUCCGCGCGc -3'
miRNA:   3'- aGCUGcAGCUa--GCGaagUAGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 48085 0.66 0.88656
Target:  5'- gCGccACGUCGAgcgcauagCGCUgcUCGUCCGUcucgGCGa -3'
miRNA:   3'- aGC--UGCAGCUa-------GCGA--AGUAGGCG----UGC- -5'
23877 3' -52.9 NC_005262.1 + 48060 0.67 0.863449
Target:  5'- gCG-CGUCGGUCGCaccugCCGCgACGa -3'
miRNA:   3'- aGCuGCAGCUAGCGaaguaGGCG-UGC- -5'
23877 3' -52.9 NC_005262.1 + 45267 0.72 0.569112
Target:  5'- cUCGgaGCGUCGAaCGCgaacuUCCGCGCGa -3'
miRNA:   3'- -AGC--UGCAGCUaGCGaagu-AGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 43872 0.69 0.741707
Target:  5'- cUCGGCG-CGAUCGCgcgCAUggCCGaCAUGa -3'
miRNA:   3'- -AGCUGCaGCUAGCGaa-GUA--GGC-GUGC- -5'
23877 3' -52.9 NC_005262.1 + 42910 0.69 0.741707
Target:  5'- aCGAuggcuCGUCG-UCGCgucgUCGUCCgGCGCGc -3'
miRNA:   3'- aGCU-----GCAGCuAGCGa---AGUAGG-CGUGC- -5'
23877 3' -52.9 NC_005262.1 + 42628 0.67 0.829354
Target:  5'- gCGAuCGUCGcUCGCUUUGUCaCGUucGCGu -3'
miRNA:   3'- aGCU-GCAGCuAGCGAAGUAG-GCG--UGC- -5'
23877 3' -52.9 NC_005262.1 + 42150 0.68 0.820298
Target:  5'- gCGGCGccgggccCGGUCGCggccgaUCGUCUGUACGu -3'
miRNA:   3'- aGCUGCa------GCUAGCGa-----AGUAGGCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.