miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23877 3' -52.9 NC_005262.1 + 3419 0.67 0.863449
Target:  5'- aCGGCGagcCGcAUCGCUUCAg-CGCGCu -3'
miRNA:   3'- aGCUGCa--GC-UAGCGAAGUagGCGUGc -5'
23877 3' -52.9 NC_005262.1 + 48060 0.67 0.863449
Target:  5'- gCG-CGUCGGUCGCaccugCCGCgACGa -3'
miRNA:   3'- aGCuGCAGCUAGCGaaguaGGCG-UGC- -5'
23877 3' -52.9 NC_005262.1 + 25527 0.67 0.863449
Target:  5'- uUCGACGUCaucaaaucgaGAUCGaauauUCCGCGCu -3'
miRNA:   3'- -AGCUGCAG----------CUAGCgaaguAGGCGUGc -5'
23877 3' -52.9 NC_005262.1 + 4908 0.67 0.863449
Target:  5'- gUGACGUCGGgcaguUUGCUcUCGaugucCCGCACGu -3'
miRNA:   3'- aGCUGCAGCU-----AGCGA-AGUa----GGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 56102 0.67 0.855262
Target:  5'- cUCGGCGaUCGAcaugCGUUUCGUcgacccgaCCGCGCc -3'
miRNA:   3'- -AGCUGC-AGCUa---GCGAAGUA--------GGCGUGc -5'
23877 3' -52.9 NC_005262.1 + 20081 0.67 0.855262
Target:  5'- uUCGACcuucuuGUCGGUgagCGCgUCG-CCGCGCGa -3'
miRNA:   3'- -AGCUG------CAGCUA---GCGaAGUaGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 37873 0.67 0.855262
Target:  5'- gUCGGCGUCGcgCGUggcgacguacCAUgCGCGCu -3'
miRNA:   3'- -AGCUGCAGCuaGCGaa--------GUAgGCGUGc -5'
23877 3' -52.9 NC_005262.1 + 41264 0.67 0.855262
Target:  5'- aCGGCGgCGAUcaCGCagaUUCggCCGCGCGu -3'
miRNA:   3'- aGCUGCaGCUA--GCG---AAGuaGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 32747 0.67 0.846845
Target:  5'- gUCGGCGUCGGUCaGCacCAgcaggcgguacuUCCGCuCGa -3'
miRNA:   3'- -AGCUGCAGCUAG-CGaaGU------------AGGCGuGC- -5'
23877 3' -52.9 NC_005262.1 + 60040 0.67 0.838206
Target:  5'- gUCGAagggcUCGAUCGCcugagCCGCGCGg -3'
miRNA:   3'- -AGCUgc---AGCUAGCGaaguaGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 29289 0.67 0.838206
Target:  5'- cCG-CGUCGucucgcagaaGUCGCgcgCcgCCGCGCGg -3'
miRNA:   3'- aGCuGCAGC----------UAGCGaa-GuaGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 4404 0.67 0.838206
Target:  5'- gCGAUGUCGcgCGCcug--CUGCGCGa -3'
miRNA:   3'- aGCUGCAGCuaGCGaaguaGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 37251 0.67 0.838206
Target:  5'- gCG-CGUCGGcCGCUUCGgaguggCCGC-CGg -3'
miRNA:   3'- aGCuGCAGCUaGCGAAGUa-----GGCGuGC- -5'
23877 3' -52.9 NC_005262.1 + 11693 0.67 0.838206
Target:  5'- aCGGCGUCGc-CGaggUCGUCCGuCAUGg -3'
miRNA:   3'- aGCUGCAGCuaGCga-AGUAGGC-GUGC- -5'
23877 3' -52.9 NC_005262.1 + 42628 0.67 0.829354
Target:  5'- gCGAuCGUCGcUCGCUUUGUCaCGUucGCGu -3'
miRNA:   3'- aGCU-GCAGCuAGCGAAGUAG-GCG--UGC- -5'
23877 3' -52.9 NC_005262.1 + 49223 0.67 0.829354
Target:  5'- gCGGCcUCGGcggCGCgcaGUCCGCGCGc -3'
miRNA:   3'- aGCUGcAGCUa--GCGaagUAGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 51354 0.68 0.820298
Target:  5'- cUCGACGagGAUCGUgcgccgCAUCgGCuCGg -3'
miRNA:   3'- -AGCUGCagCUAGCGaa----GUAGgCGuGC- -5'
23877 3' -52.9 NC_005262.1 + 42150 0.68 0.820298
Target:  5'- gCGGCGccgggccCGGUCGCggccgaUCGUCUGUACGu -3'
miRNA:   3'- aGCUGCa------GCUAGCGa-----AGUAGGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 49575 0.68 0.820298
Target:  5'- gCGugGUCGAcaUCGCgcccgccgUCAgugCCGCGUGg -3'
miRNA:   3'- aGCugCAGCU--AGCGa-------AGUa--GGCGUGC- -5'
23877 3' -52.9 NC_005262.1 + 2331 0.68 0.820298
Target:  5'- -aGAUGUCGucuagCGCUUCgccGUCCGC-CGc -3'
miRNA:   3'- agCUGCAGCua---GCGAAG---UAGGCGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.