miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23879 5' -53.7 NC_005262.1 + 33849 0.7 0.631704
Target:  5'- cGCCGCCGC-CcgCG---UCCGGGUcGUc -3'
miRNA:   3'- -CGGCGGCGuGuaGCuuaAGGUCCA-CG- -5'
23879 5' -53.7 NC_005262.1 + 51530 0.7 0.631704
Target:  5'- cGCCgGCCGCG-AUCGA----CAGGUGCc -3'
miRNA:   3'- -CGG-CGGCGUgUAGCUuaagGUCCACG- -5'
23879 5' -53.7 NC_005262.1 + 39980 0.7 0.631704
Target:  5'- uGCCGaguacCUGCGCGUCGucucgaUCguGGUGCg -3'
miRNA:   3'- -CGGC-----GGCGUGUAGCuua---AGguCCACG- -5'
23879 5' -53.7 NC_005262.1 + 47226 0.7 0.639385
Target:  5'- cGCCGCCGCagauguucgagaugGCAUgGAAgcgCCAGcagGCg -3'
miRNA:   3'- -CGGCGGCG--------------UGUAgCUUaa-GGUCca-CG- -5'
23879 5' -53.7 NC_005262.1 + 1069 0.7 0.642677
Target:  5'- aCCGCCaGCGCGcCGA--UCaGGGUGCg -3'
miRNA:   3'- cGGCGG-CGUGUaGCUuaAGgUCCACG- -5'
23879 5' -53.7 NC_005262.1 + 34970 0.7 0.642677
Target:  5'- cGCUcgGCCGCAaGUCGAAgcUCCAGGcagccggGCa -3'
miRNA:   3'- -CGG--CGGCGUgUAGCUUa-AGGUCCa------CG- -5'
23879 5' -53.7 NC_005262.1 + 39417 0.7 0.642677
Target:  5'- cGCCGCCGguuugGCGUCGAcaggGUUgCAGGUaucagGCg -3'
miRNA:   3'- -CGGCGGCg----UGUAGCU----UAAgGUCCA-----CG- -5'
23879 5' -53.7 NC_005262.1 + 41101 0.69 0.65364
Target:  5'- cGCCGCCGgcCACGUCGAGaUC---GUGCg -3'
miRNA:   3'- -CGGCGGC--GUGUAGCUUaAGgucCACG- -5'
23879 5' -53.7 NC_005262.1 + 15374 0.69 0.664583
Target:  5'- uGCCGCCGUcCGUCGug-UUCGGGa-- -3'
miRNA:   3'- -CGGCGGCGuGUAGCuuaAGGUCCacg -5'
23879 5' -53.7 NC_005262.1 + 21440 0.69 0.674406
Target:  5'- uCCGCgaGCugGUCGAGUUCCGccgcuuuGcGUGCc -3'
miRNA:   3'- cGGCGg-CGugUAGCUUAAGGU-------C-CACG- -5'
23879 5' -53.7 NC_005262.1 + 40127 0.69 0.675496
Target:  5'- cGCCGCuCGgGCGgcauccaCGGAUUCacgCAGGUGUa -3'
miRNA:   3'- -CGGCG-GCgUGUa------GCUUAAG---GUCCACG- -5'
23879 5' -53.7 NC_005262.1 + 56990 0.69 0.675496
Target:  5'- aCCGCCuacgacaaGCGCGaCGAGUUCuCGGGcGCg -3'
miRNA:   3'- cGGCGG--------CGUGUaGCUUAAG-GUCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 3557 0.69 0.675496
Target:  5'- uGCCGCCGUGCAUgCGGuAUUCCuucaGCa -3'
miRNA:   3'- -CGGCGGCGUGUA-GCU-UAAGGuccaCG- -5'
23879 5' -53.7 NC_005262.1 + 38258 0.69 0.686368
Target:  5'- uGCCGCCGCGCA-CGGAcgUCgCGacgcGGaUGCu -3'
miRNA:   3'- -CGGCGGCGUGUaGCUUa-AG-GU----CC-ACG- -5'
23879 5' -53.7 NC_005262.1 + 30629 0.69 0.697189
Target:  5'- cGCCGCCGaCGC-UCGGca---AGGUGCc -3'
miRNA:   3'- -CGGCGGC-GUGuAGCUuaaggUCCACG- -5'
23879 5' -53.7 NC_005262.1 + 5348 0.68 0.707946
Target:  5'- -aCGCCGCGCA-CGccugCCGGG-GCg -3'
miRNA:   3'- cgGCGGCGUGUaGCuuaaGGUCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 58895 0.68 0.707946
Target:  5'- uGCUGCCGCGCugcgCGA---UCAGGccgGCg -3'
miRNA:   3'- -CGGCGGCGUGua--GCUuaaGGUCCa--CG- -5'
23879 5' -53.7 NC_005262.1 + 2734 0.68 0.707946
Target:  5'- cGCC-CUGCGCcUCGAggUCCcGGaUGCg -3'
miRNA:   3'- -CGGcGGCGUGuAGCUuaAGGuCC-ACG- -5'
23879 5' -53.7 NC_005262.1 + 42171 0.68 0.707946
Target:  5'- cGCCGUCGC-CGUCGcacUCCGGGc-- -3'
miRNA:   3'- -CGGCGGCGuGUAGCuuaAGGUCCacg -5'
23879 5' -53.7 NC_005262.1 + 54623 0.68 0.718631
Target:  5'- cGCCGaCCGC-CAUgcgUGAAggcgCCGGGUGa -3'
miRNA:   3'- -CGGC-GGCGuGUA---GCUUaa--GGUCCACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.