miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23879 5' -53.7 NC_005262.1 + 57169 1.15 0.000689
Target:  5'- cGCCGCCGCACAUCGAAUUCCAGGUGCa -3'
miRNA:   3'- -CGGCGGCGUGUAGCUUAAGGUCCACG- -5'
23879 5' -53.7 NC_005262.1 + 52047 0.8 0.166749
Target:  5'- cGCCGgCGCcuACAUCGAGUcCgGGGUGCg -3'
miRNA:   3'- -CGGCgGCG--UGUAGCUUAaGgUCCACG- -5'
23879 5' -53.7 NC_005262.1 + 3799 0.79 0.201308
Target:  5'- -aCGCCGCGCAucaucUCGAGgaUCGGGUGCa -3'
miRNA:   3'- cgGCGGCGUGU-----AGCUUaaGGUCCACG- -5'
23879 5' -53.7 NC_005262.1 + 12563 0.74 0.386263
Target:  5'- aGCCGgCGCGCAU-GAGgagCCcGGUGCg -3'
miRNA:   3'- -CGGCgGCGUGUAgCUUaa-GGuCCACG- -5'
23879 5' -53.7 NC_005262.1 + 59002 0.74 0.39165
Target:  5'- cGCCGUCGCGCuUCGAccgucugcaagCCGcGGUGCa -3'
miRNA:   3'- -CGGCGGCGUGuAGCUuaa--------GGU-CCACG- -5'
23879 5' -53.7 NC_005262.1 + 34069 0.73 0.442266
Target:  5'- cGCCgGCUGCGCuUCGGAUgcugcuuggCCcGGUGCg -3'
miRNA:   3'- -CGG-CGGCGUGuAGCUUAa--------GGuCCACG- -5'
23879 5' -53.7 NC_005262.1 + 57669 0.73 0.465918
Target:  5'- gGCCG-CGCACAUCGAggcgacugugccgccGUUCCGcaacGUGCg -3'
miRNA:   3'- -CGGCgGCGUGUAGCU---------------UAAGGUc---CACG- -5'
23879 5' -53.7 NC_005262.1 + 56949 0.72 0.492261
Target:  5'- cGCCGauCCGCGCGggCGAGUUCgCGGGcGUg -3'
miRNA:   3'- -CGGC--GGCGUGUa-GCUUAAG-GUCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 12618 0.72 0.502575
Target:  5'- gGCCGCCGCGuCGUCGGcugCCuGcUGCg -3'
miRNA:   3'- -CGGCGGCGU-GUAGCUuaaGGuCcACG- -5'
23879 5' -53.7 NC_005262.1 + 31865 0.71 0.534053
Target:  5'- aCCGCCGUACAgcagguggUCGAcgUCC-GGcGCg -3'
miRNA:   3'- cGGCGGCGUGU--------AGCUuaAGGuCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 31631 0.71 0.534053
Target:  5'- cGCCGCCGCcuucuggaaGUCGA--UCCAcGUGCc -3'
miRNA:   3'- -CGGCGGCGug-------UAGCUuaAGGUcCACG- -5'
23879 5' -53.7 NC_005262.1 + 23092 0.71 0.534053
Target:  5'- cGCCGCCGUAUuauggccgugCGAGUgUCCAGG-GUc -3'
miRNA:   3'- -CGGCGGCGUGua--------GCUUA-AGGUCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 29313 0.71 0.543636
Target:  5'- cGCCGCCGCGCGgaugugcUCGAAcgccguaggcUCCGGGcaGCc -3'
miRNA:   3'- -CGGCGGCGUGU-------AGCUUa---------AGGUCCa-CG- -5'
23879 5' -53.7 NC_005262.1 + 62563 0.71 0.544704
Target:  5'- cGCCGaaGCACuUCGGA---CGGGUGCg -3'
miRNA:   3'- -CGGCggCGUGuAGCUUaagGUCCACG- -5'
23879 5' -53.7 NC_005262.1 + 32167 0.71 0.544704
Target:  5'- aUCGCCGUAgGUCGGcuugccgCgCAGGUGCa -3'
miRNA:   3'- cGGCGGCGUgUAGCUuaa----G-GUCCACG- -5'
23879 5' -53.7 NC_005262.1 + 56816 0.71 0.555423
Target:  5'- cGUCGCCGUACuucacCGAAUUCgAGcUGCa -3'
miRNA:   3'- -CGGCGGCGUGua---GCUUAAGgUCcACG- -5'
23879 5' -53.7 NC_005262.1 + 14091 0.71 0.566202
Target:  5'- cGCCGCCcgGCACgccGUCGcggUUCAGGUuGCg -3'
miRNA:   3'- -CGGCGG--CGUG---UAGCuuaAGGUCCA-CG- -5'
23879 5' -53.7 NC_005262.1 + 34716 0.7 0.598827
Target:  5'- gGCCGUCGUugAcCGucacauAUUCCGGGUuGCc -3'
miRNA:   3'- -CGGCGGCGugUaGCu-----UAAGGUCCA-CG- -5'
23879 5' -53.7 NC_005262.1 + 45684 0.7 0.598827
Target:  5'- uGCCGCacuucguGCGCAUCGAGggCCGGcaGCc -3'
miRNA:   3'- -CGGCGg------CGUGUAGCUUaaGGUCcaCG- -5'
23879 5' -53.7 NC_005262.1 + 61915 0.7 0.620732
Target:  5'- -aCGCCGCAgGgcugcgccggcUCGAaaccaacgGUUCuCAGGUGCa -3'
miRNA:   3'- cgGCGGCGUgU-----------AGCU--------UAAG-GUCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.