miRNA display CGI


Results 1 - 20 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23879 5' -53.7 NC_005262.1 + 1069 0.7 0.642677
Target:  5'- aCCGCCaGCGCGcCGA--UCaGGGUGCg -3'
miRNA:   3'- cGGCGG-CGUGUaGCUuaAGgUCCACG- -5'
23879 5' -53.7 NC_005262.1 + 2067 0.66 0.854181
Target:  5'- aGCCaGCgugCGCACAUgGucgcUUCCGGGgGCa -3'
miRNA:   3'- -CGG-CG---GCGUGUAgCuu--AAGGUCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 2734 0.68 0.707946
Target:  5'- cGCC-CUGCGCcUCGAggUCCcGGaUGCg -3'
miRNA:   3'- -CGGcGGCGUGuAGCUuaAGGuCC-ACG- -5'
23879 5' -53.7 NC_005262.1 + 3557 0.69 0.675496
Target:  5'- uGCCGCCGUGCAUgCGGuAUUCCuucaGCa -3'
miRNA:   3'- -CGGCGGCGUGUA-GCU-UAAGGuccaCG- -5'
23879 5' -53.7 NC_005262.1 + 3799 0.79 0.201308
Target:  5'- -aCGCCGCGCAucaucUCGAGgaUCGGGUGCa -3'
miRNA:   3'- cgGCGGCGUGU-----AGCUUaaGGUCCACG- -5'
23879 5' -53.7 NC_005262.1 + 5348 0.68 0.707946
Target:  5'- -aCGCCGCGCA-CGccugCCGGG-GCg -3'
miRNA:   3'- cgGCGGCGUGUaGCuuaaGGUCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 5720 0.67 0.780549
Target:  5'- uGCCGUCGCGCAccUUGA---CCuuGGUGUu -3'
miRNA:   3'- -CGGCGGCGUGU--AGCUuaaGGu-CCACG- -5'
23879 5' -53.7 NC_005262.1 + 6351 0.67 0.770546
Target:  5'- cGCCGCCGCGgCAUCcgcggaC-GGUGCc -3'
miRNA:   3'- -CGGCGGCGU-GUAGcuuaagGuCCACG- -5'
23879 5' -53.7 NC_005262.1 + 9473 0.68 0.750127
Target:  5'- uGCCGa-GCGCGUCGAugacgUCCuGGcgGCu -3'
miRNA:   3'- -CGGCggCGUGUAGCUua---AGGuCCa-CG- -5'
23879 5' -53.7 NC_005262.1 + 10852 0.67 0.809596
Target:  5'- uGCCGCCGg----CGAAgcCCAGGcgGCg -3'
miRNA:   3'- -CGGCGGCguguaGCUUaaGGUCCa-CG- -5'
23879 5' -53.7 NC_005262.1 + 11406 0.68 0.750127
Target:  5'- cGCCgaaGCCGCGCcgCGccgggccgCCgaAGGUGCg -3'
miRNA:   3'- -CGG---CGGCGUGuaGCuuaa----GG--UCCACG- -5'
23879 5' -53.7 NC_005262.1 + 12137 0.66 0.828054
Target:  5'- aUCGCCGCGC-UgGAGagCCAGGUu- -3'
miRNA:   3'- cGGCGGCGUGuAgCUUaaGGUCCAcg -5'
23879 5' -53.7 NC_005262.1 + 12563 0.74 0.386263
Target:  5'- aGCCGgCGCGCAU-GAGgagCCcGGUGCg -3'
miRNA:   3'- -CGGCgGCGUGUAgCUUaa-GGuCCACG- -5'
23879 5' -53.7 NC_005262.1 + 12618 0.72 0.502575
Target:  5'- gGCCGCCGCGuCGUCGGcugCCuGcUGCg -3'
miRNA:   3'- -CGGCGGCGU-GUAGCUuaaGGuCcACG- -5'
23879 5' -53.7 NC_005262.1 + 14091 0.71 0.566202
Target:  5'- cGCCGCCcgGCACgccGUCGcggUUCAGGUuGCg -3'
miRNA:   3'- -CGGCGG--CGUG---UAGCuuaAGGUCCA-CG- -5'
23879 5' -53.7 NC_005262.1 + 14386 0.67 0.790399
Target:  5'- aGCCGCauguGCugAUCGG-UUUgGcGGUGCg -3'
miRNA:   3'- -CGGCGg---CGugUAGCUuAAGgU-CCACG- -5'
23879 5' -53.7 NC_005262.1 + 15259 0.66 0.828054
Target:  5'- gGCUcCUGCGCAUCGAgacgcgAUUgCAGGUcgaGCg -3'
miRNA:   3'- -CGGcGGCGUGUAGCU------UAAgGUCCA---CG- -5'
23879 5' -53.7 NC_005262.1 + 15374 0.69 0.664583
Target:  5'- uGCCGCCGUcCGUCGug-UUCGGGa-- -3'
miRNA:   3'- -CGGCGGCGuGUAGCuuaAGGUCCacg -5'
23879 5' -53.7 NC_005262.1 + 16679 0.67 0.796231
Target:  5'- gGCCGCagccgggcgaggaGUGCAUCGucacgCAGGUGCu -3'
miRNA:   3'- -CGGCGg------------CGUGUAGCuuaagGUCCACG- -5'
23879 5' -53.7 NC_005262.1 + 19795 0.67 0.800085
Target:  5'- gGUCGUCGCACAUCGGGcggucgcaagucUUCCcuuuuccgaccGGGUagucGCa -3'
miRNA:   3'- -CGGCGGCGUGUAGCUU------------AAGG-----------UCCA----CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.