miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23879 5' -53.7 NC_005262.1 + 14386 0.67 0.790399
Target:  5'- aGCCGCauguGCugAUCGG-UUUgGcGGUGCg -3'
miRNA:   3'- -CGGCGg---CGugUAGCUuAAGgU-CCACG- -5'
23879 5' -53.7 NC_005262.1 + 2734 0.68 0.707946
Target:  5'- cGCC-CUGCGCcUCGAggUCCcGGaUGCg -3'
miRNA:   3'- -CGGcGGCGUGuAGCUuaAGGuCC-ACG- -5'
23879 5' -53.7 NC_005262.1 + 49825 0.68 0.739732
Target:  5'- gGCCGCgcgauggaGCGCG-CGAAUggCCcGGUGCc -3'
miRNA:   3'- -CGGCGg-------CGUGUaGCUUAa-GGuCCACG- -5'
23879 5' -53.7 NC_005262.1 + 58538 0.68 0.750127
Target:  5'- uGCUGCUGCACGagGcGUUCCaccaAGGcgGCg -3'
miRNA:   3'- -CGGCGGCGUGUagCuUAAGG----UCCa-CG- -5'
23879 5' -53.7 NC_005262.1 + 11406 0.68 0.750127
Target:  5'- cGCCgaaGCCGCGCcgCGccgggccgCCgaAGGUGCg -3'
miRNA:   3'- -CGG---CGGCGUGuaGCuuaa----GG--UCCACG- -5'
23879 5' -53.7 NC_005262.1 + 26274 0.68 0.750127
Target:  5'- cCUGCCGCACGacgCGGA--CCAcGUGCg -3'
miRNA:   3'- cGGCGGCGUGUa--GCUUaaGGUcCACG- -5'
23879 5' -53.7 NC_005262.1 + 54105 0.68 0.750127
Target:  5'- cGCUGCUGCGCcUCGAcgUCgAcGGcGCc -3'
miRNA:   3'- -CGGCGGCGUGuAGCUuaAGgU-CCaCG- -5'
23879 5' -53.7 NC_005262.1 + 5720 0.67 0.780549
Target:  5'- uGCCGUCGCGCAccUUGA---CCuuGGUGUu -3'
miRNA:   3'- -CGGCGGCGUGU--AGCUuaaGGu-CCACG- -5'
23879 5' -53.7 NC_005262.1 + 49607 0.67 0.780549
Target:  5'- cGCUcgGCCGCgACGUCGcuaaCCAGGcGCu -3'
miRNA:   3'- -CGG--CGGCG-UGUAGCuuaaGGUCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 58895 0.68 0.707946
Target:  5'- uGCUGCCGCGCugcgCGA---UCAGGccgGCg -3'
miRNA:   3'- -CGGCGGCGUGua--GCUuaaGGUCCa--CG- -5'
23879 5' -53.7 NC_005262.1 + 30629 0.69 0.697189
Target:  5'- cGCCGCCGaCGC-UCGGca---AGGUGCc -3'
miRNA:   3'- -CGGCGGC-GUGuAGCUuaaggUCCACG- -5'
23879 5' -53.7 NC_005262.1 + 56990 0.69 0.675496
Target:  5'- aCCGCCuacgacaaGCGCGaCGAGUUCuCGGGcGCg -3'
miRNA:   3'- cGGCGG--------CGUGUaGCUUAAG-GUCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 59002 0.74 0.39165
Target:  5'- cGCCGUCGCGCuUCGAccgucugcaagCCGcGGUGCa -3'
miRNA:   3'- -CGGCGGCGUGuAGCUuaa--------GGU-CCACG- -5'
23879 5' -53.7 NC_005262.1 + 56949 0.72 0.492261
Target:  5'- cGCCGauCCGCGCGggCGAGUUCgCGGGcGUg -3'
miRNA:   3'- -CGGC--GGCGUGUa-GCUUAAG-GUCCaCG- -5'
23879 5' -53.7 NC_005262.1 + 45684 0.7 0.598827
Target:  5'- uGCCGCacuucguGCGCAUCGAGggCCGGcaGCc -3'
miRNA:   3'- -CGGCGg------CGUGUAGCUUaaGGUCcaCG- -5'
23879 5' -53.7 NC_005262.1 + 61915 0.7 0.620732
Target:  5'- -aCGCCGCAgGgcugcgccggcUCGAaaccaacgGUUCuCAGGUGCa -3'
miRNA:   3'- cgGCGGCGUgU-----------AGCU--------UAAG-GUCCACG- -5'
23879 5' -53.7 NC_005262.1 + 47226 0.7 0.639385
Target:  5'- cGCCGCCGCagauguucgagaugGCAUgGAAgcgCCAGcagGCg -3'
miRNA:   3'- -CGGCGGCG--------------UGUAgCUUaa-GGUCca-CG- -5'
23879 5' -53.7 NC_005262.1 + 34970 0.7 0.642677
Target:  5'- cGCUcgGCCGCAaGUCGAAgcUCCAGGcagccggGCa -3'
miRNA:   3'- -CGG--CGGCGUgUAGCUUa-AGGUCCa------CG- -5'
23879 5' -53.7 NC_005262.1 + 41101 0.69 0.65364
Target:  5'- cGCCGCCGgcCACGUCGAGaUC---GUGCg -3'
miRNA:   3'- -CGGCGGC--GUGUAGCUUaAGgucCACG- -5'
23879 5' -53.7 NC_005262.1 + 21440 0.69 0.674406
Target:  5'- uCCGCgaGCugGUCGAGUUCCGccgcuuuGcGUGCc -3'
miRNA:   3'- cGGCGg-CGugUAGCUUAAGGU-------C-CACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.