miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23880 5' -51.3 NC_005262.1 + 6622 0.66 0.940445
Target:  5'- ---aGCGACACgAgcgGCgAGGGGUcGCCg -3'
miRNA:   3'- gguaUGCUGUGgUa--UG-UCCUCGuCGG- -5'
23880 5' -51.3 NC_005262.1 + 61544 0.66 0.939935
Target:  5'- gCCGUcaucgacGCGGC-CCGagacuuugcccuUACAgGGAGCGGCUu -3'
miRNA:   3'- -GGUA-------UGCUGuGGU------------AUGU-CCUCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 58569 0.66 0.937342
Target:  5'- gCGU-CGACGCCAcggcgaucgUGCAGGAuacgcccucggucgcGCcGGCCg -3'
miRNA:   3'- gGUAuGCUGUGGU---------AUGUCCU---------------CG-UCGG- -5'
23880 5' -51.3 NC_005262.1 + 24185 0.66 0.935217
Target:  5'- cCCcgGCGAguUCAcGCccgAGGcGGCAGCCg -3'
miRNA:   3'- -GGuaUGCUguGGUaUG---UCC-UCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 30770 0.66 0.935217
Target:  5'- gCgGUACGuCAgCAU-CAGGcGCAGCUu -3'
miRNA:   3'- -GgUAUGCuGUgGUAuGUCCuCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 54248 0.66 0.935217
Target:  5'- gCCAUACGGCuCCuugagAUAGGuuaAGCCc -3'
miRNA:   3'- -GGUAUGCUGuGGua---UGUCCucgUCGG- -5'
23880 5' -51.3 NC_005262.1 + 44937 0.66 0.935217
Target:  5'- --cUACGACAgccCCGagcguCAGGAGCagauGGCCg -3'
miRNA:   3'- gguAUGCUGU---GGUau---GUCCUCG----UCGG- -5'
23880 5' -51.3 NC_005262.1 + 23400 0.66 0.935217
Target:  5'- gCCAcaagGCGGCG--AUGCGGcGGGCAGCa -3'
miRNA:   3'- -GGUa---UGCUGUggUAUGUC-CUCGUCGg -5'
23880 5' -51.3 NC_005262.1 + 55059 0.66 0.935217
Target:  5'- ---cGCGACgGgCAUGgAGGAGC-GCCg -3'
miRNA:   3'- gguaUGCUG-UgGUAUgUCCUCGuCGG- -5'
23880 5' -51.3 NC_005262.1 + 30968 0.66 0.935217
Target:  5'- gCAggcggGCGACuACCucgugAUACAGGAGgaCGGCUa -3'
miRNA:   3'- gGUa----UGCUG-UGG-----UAUGUCCUC--GUCGG- -5'
23880 5' -51.3 NC_005262.1 + 38309 0.66 0.935217
Target:  5'- -gGUGCGACACCAcacuUAgAGGcGCGGa- -3'
miRNA:   3'- ggUAUGCUGUGGU----AUgUCCuCGUCgg -5'
23880 5' -51.3 NC_005262.1 + 5269 0.66 0.935217
Target:  5'- cUCGUGCaGCAgCAcggGCAGG-GCGGUCg -3'
miRNA:   3'- -GGUAUGcUGUgGUa--UGUCCuCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 40135 0.66 0.933593
Target:  5'- -aGUACGACGCUcgcgcugcaacccggACAGGGuGCGGCg -3'
miRNA:   3'- ggUAUGCUGUGGua-------------UGUCCU-CGUCGg -5'
23880 5' -51.3 NC_005262.1 + 12927 0.66 0.929706
Target:  5'- gCCGUGCGAUugCGUcgGCAccuGCGGCa -3'
miRNA:   3'- -GGUAUGCUGugGUA--UGUccuCGUCGg -5'
23880 5' -51.3 NC_005262.1 + 54086 0.66 0.929706
Target:  5'- gCGUAUGGCGCCcu-CGGGuuuGGCgcgAGCCu -3'
miRNA:   3'- gGUAUGCUGUGGuauGUCC---UCG---UCGG- -5'
23880 5' -51.3 NC_005262.1 + 53918 0.66 0.929706
Target:  5'- ---cGCGACGCgCugaaGCAGGcGCAGCUc -3'
miRNA:   3'- gguaUGCUGUG-Gua--UGUCCuCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 60436 0.66 0.923912
Target:  5'- aUCGUGCGGCAUCuaGCgAGccGCGGCCu -3'
miRNA:   3'- -GGUAUGCUGUGGuaUG-UCcuCGUCGG- -5'
23880 5' -51.3 NC_005262.1 + 54122 0.66 0.923912
Target:  5'- ---cAUGACGgUGUuugcGCAGGAGCGGCa -3'
miRNA:   3'- gguaUGCUGUgGUA----UGUCCUCGUCGg -5'
23880 5' -51.3 NC_005262.1 + 28610 0.66 0.923912
Target:  5'- uUCAUGCG-CGgCAUGCAGGAcgacgugaacaaGC-GCCu -3'
miRNA:   3'- -GGUAUGCuGUgGUAUGUCCU------------CGuCGG- -5'
23880 5' -51.3 NC_005262.1 + 10562 0.66 0.923912
Target:  5'- gCCGcGCGcagccGCAgCGUACcgcGGAGCAGCg -3'
miRNA:   3'- -GGUaUGC-----UGUgGUAUGu--CCUCGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.