miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23881 5' -54.9 NC_005262.1 + 56505 1.12 0.001012
Target:  5'- cGCGAGAACGUGCCGCUCGAAUCGGCGa -3'
miRNA:   3'- -CGCUCUUGCACGGCGAGCUUAGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 13817 0.79 0.175958
Target:  5'- gGCGGGAGCGggcGCCGCugUCucGUCGGCGa -3'
miRNA:   3'- -CGCUCUUGCa--CGGCG--AGcuUAGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 52908 0.79 0.180694
Target:  5'- aGCGAGGGCGUGauCCGCUCGAucuacgaCGGCc -3'
miRNA:   3'- -CGCUCUUGCAC--GGCGAGCUua-----GCCGc -5'
23881 5' -54.9 NC_005262.1 + 21510 0.77 0.249317
Target:  5'- cGCGAGAAcacgucgccggugccCGUGCCGCUCGucgccgcagugaGcgCGGCGc -3'
miRNA:   3'- -CGCUCUU---------------GCACGGCGAGC------------UuaGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 35392 0.77 0.253132
Target:  5'- uCGAGcACGUGCCGCUCGucguUCGGg- -3'
miRNA:   3'- cGCUCuUGCACGGCGAGCuu--AGCCgc -5'
23881 5' -54.9 NC_005262.1 + 17370 0.76 0.259596
Target:  5'- cGCGAucaaGAACcUGCCGgUCGAcUCGGCGg -3'
miRNA:   3'- -CGCU----CUUGcACGGCgAGCUuAGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 25348 0.75 0.293943
Target:  5'- gGCGAcGAGCGUGCCG-UCGuc-CGGCGu -3'
miRNA:   3'- -CGCU-CUUGCACGGCgAGCuuaGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 52445 0.74 0.339707
Target:  5'- uCGucGACGUGCCGCgcgCGAG-CGGCGu -3'
miRNA:   3'- cGCucUUGCACGGCGa--GCUUaGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 47278 0.74 0.347819
Target:  5'- gGCGAaAACGgacGCCGCggCGAagAUCGGCGa -3'
miRNA:   3'- -CGCUcUUGCa--CGGCGa-GCU--UAGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 49708 0.74 0.347819
Target:  5'- cGCGAcGGCGUGCCGggcggCGAAcCGGCGg -3'
miRNA:   3'- -CGCUcUUGCACGGCga---GCUUaGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 6133 0.74 0.347819
Target:  5'- cGCGAGAAgucgauCGUGCCGCcgaUCGAGUCGuucucgacGCGc -3'
miRNA:   3'- -CGCUCUU------GCACGGCG---AGCUUAGC--------CGC- -5'
23881 5' -54.9 NC_005262.1 + 42002 0.73 0.39042
Target:  5'- cGCGAcGAACGc-CCGcCUCGAAUCgGGCGg -3'
miRNA:   3'- -CGCU-CUUGCacGGC-GAGCUUAG-CCGC- -5'
23881 5' -54.9 NC_005262.1 + 20096 0.73 0.39934
Target:  5'- gGUGAGcGCGUcGCCGCgCGAAUuCGGCc -3'
miRNA:   3'- -CGCUCuUGCA-CGGCGaGCUUA-GCCGc -5'
23881 5' -54.9 NC_005262.1 + 21582 0.73 0.417566
Target:  5'- aGCGGGuacguCGUGCCGCcgaCGAucaucuUCGGCGc -3'
miRNA:   3'- -CGCUCuu---GCACGGCGa--GCUu-----AGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 34757 0.73 0.417566
Target:  5'- cGCGu---CGUgccggcGCCGCUCGAGcUCGGCGg -3'
miRNA:   3'- -CGCucuuGCA------CGGCGAGCUU-AGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 53080 0.73 0.426867
Target:  5'- uGCGGGAGCGccgGCCGCgugCGcg-CGGCc -3'
miRNA:   3'- -CGCUCUUGCa--CGGCGa--GCuuaGCCGc -5'
23881 5' -54.9 NC_005262.1 + 49009 0.72 0.465256
Target:  5'- cGCGAGAugGacagGCCGaa-GAAuUCGGCGa -3'
miRNA:   3'- -CGCUCUugCa---CGGCgagCUU-AGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 52360 0.71 0.495191
Target:  5'- cGCGGGcgcGGCGUGUCGCgcaccuUCGGCGg -3'
miRNA:   3'- -CGCUC---UUGCACGGCGagcuu-AGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 30389 0.71 0.495191
Target:  5'- gGCGGGAACGUGgCGCcugcgaccUUGAGcugggCGGCGu -3'
miRNA:   3'- -CGCUCUUGCACgGCG--------AGCUUa----GCCGC- -5'
23881 5' -54.9 NC_005262.1 + 15600 0.71 0.495191
Target:  5'- cGCGAGGagcGCGUGCgGCaggagcgcaUCGAGgcgCGGCu -3'
miRNA:   3'- -CGCUCU---UGCACGgCG---------AGCUUa--GCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.