miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23881 5' -54.9 NC_005262.1 + 6950 0.68 0.704355
Target:  5'- -gGAGAggcguccggucuugACcugGUGCaGCUCGAAUCGGUGa -3'
miRNA:   3'- cgCUCU--------------UG---CACGgCGAGCUUAGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 30117 0.69 0.653019
Target:  5'- cGCGAagcccacGAuCGUGCCGCUgcuggucgcCGAAgcgcCGGCGg -3'
miRNA:   3'- -CGCU-------CUuGCACGGCGA---------GCUUa---GCCGC- -5'
23881 5' -54.9 NC_005262.1 + 15126 0.69 0.654096
Target:  5'- gGCGuGGAaugcacgcaucGCG-GCCgGCgUCGAGUCGGCGc -3'
miRNA:   3'- -CGC-UCU-----------UGCaCGG-CG-AGCUUAGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 3782 0.69 0.654096
Target:  5'- aUGAGAACGgaGCCGgUCGGAaccCGGCc -3'
miRNA:   3'- cGCUCUUGCa-CGGCgAGCUUa--GCCGc -5'
23881 5' -54.9 NC_005262.1 + 62820 0.68 0.683088
Target:  5'- -aGGGcGACGUGCCgacgaucggccacgGCUCGAcgCGGUa -3'
miRNA:   3'- cgCUC-UUGCACGG--------------CGAGCUuaGCCGc -5'
23881 5' -54.9 NC_005262.1 + 35987 0.68 0.685225
Target:  5'- cGCGGGAucgugcguuccACGUGCCGCgCGAgugccgucgcaucAUCGuGCc -3'
miRNA:   3'- -CGCUCU-----------UGCACGGCGaGCU-------------UAGC-CGc -5'
23881 5' -54.9 NC_005262.1 + 12324 0.68 0.686292
Target:  5'- uGCGGcu-CGUGCCGCagCGcg-CGGCGg -3'
miRNA:   3'- -CGCUcuuGCACGGCGa-GCuuaGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 59480 0.68 0.686292
Target:  5'- cGCGaAGGcauaccaaaacuACGUGCCGCU-GAAgggcgaCGGCGa -3'
miRNA:   3'- -CGC-UCU------------UGCACGGCGAgCUUa-----GCCGC- -5'
23881 5' -54.9 NC_005262.1 + 17753 0.68 0.696938
Target:  5'- aGCGGGcgGACGacacGCUGCUCGAAUUcgaGGCc -3'
miRNA:   3'- -CGCUC--UUGCa---CGGCGAGCUUAG---CCGc -5'
23881 5' -54.9 NC_005262.1 + 26366 0.69 0.651941
Target:  5'- uCGAGAuCGUGCCGCgcaucgaugacgUGAAUUGGgGc -3'
miRNA:   3'- cGCUCUuGCACGGCGa-----------GCUUAGCCgC- -5'
23881 5' -54.9 NC_005262.1 + 18051 0.69 0.643312
Target:  5'- cGCGAGGAguacgacagucuCGUGaCgCGCUCGAAcUGGCu -3'
miRNA:   3'- -CGCUCUU------------GCAC-G-GCGAGCUUaGCCGc -5'
23881 5' -54.9 NC_005262.1 + 57300 0.7 0.578721
Target:  5'- aGC-AGAACGagcGCCGCaUCGAgcagAUCGGCa -3'
miRNA:   3'- -CGcUCUUGCa--CGGCG-AGCU----UAGCCGc -5'
23881 5' -54.9 NC_005262.1 + 17370 0.76 0.259596
Target:  5'- cGCGAucaaGAACcUGCCGgUCGAcUCGGCGg -3'
miRNA:   3'- -CGCU----CUUGcACGGCgAGCUuAGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 47278 0.74 0.347819
Target:  5'- gGCGAaAACGgacGCCGCggCGAagAUCGGCGa -3'
miRNA:   3'- -CGCUcUUGCa--CGGCGa-GCU--UAGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 49708 0.74 0.347819
Target:  5'- cGCGAcGGCGUGCCGggcggCGAAcCGGCGg -3'
miRNA:   3'- -CGCUcUUGCACGGCga---GCUUaGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 42002 0.73 0.39042
Target:  5'- cGCGAcGAACGc-CCGcCUCGAAUCgGGCGg -3'
miRNA:   3'- -CGCU-CUUGCacGGC-GAGCUUAG-CCGC- -5'
23881 5' -54.9 NC_005262.1 + 34757 0.73 0.417566
Target:  5'- cGCGu---CGUgccggcGCCGCUCGAGcUCGGCGg -3'
miRNA:   3'- -CGCucuuGCA------CGGCGAGCUU-AGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 15600 0.71 0.495191
Target:  5'- cGCGAGGagcGCGUGCgGCaggagcgcaUCGAGgcgCGGCu -3'
miRNA:   3'- -CGCUCU---UGCACGgCG---------AGCUUa--GCCGc -5'
23881 5' -54.9 NC_005262.1 + 50427 0.71 0.54058
Target:  5'- cGCGAGGGCcgcgugcacgucgucGUGCCGCgCGAGgaggaCGGCc -3'
miRNA:   3'- -CGCUCUUG---------------CACGGCGaGCUUa----GCCGc -5'
23881 5' -54.9 NC_005262.1 + 53702 0.7 0.568056
Target:  5'- cGCGcAGAACccgGCCGCgUCGAAggccgUGGCGc -3'
miRNA:   3'- -CGC-UCUUGca-CGGCG-AGCUUa----GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.