miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23881 5' -54.9 NC_005262.1 + 887 0.69 0.654096
Target:  5'- aUGAGAuuGCGcGCCaGCUCG--UCGGCGc -3'
miRNA:   3'- cGCUCU--UGCaCGG-CGAGCuuAGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 1030 0.67 0.769168
Target:  5'- uUGAGGcCGUGgCGUUCGAcaauaggcgcgAUCGGCc -3'
miRNA:   3'- cGCUCUuGCACgGCGAGCU-----------UAGCCGc -5'
23881 5' -54.9 NC_005262.1 + 1995 0.7 0.564866
Target:  5'- cGCGAGGcAUGcGCCGCgcaggCGAaaacgcgcuggucgGUCGGCGc -3'
miRNA:   3'- -CGCUCU-UGCaCGGCGa----GCU--------------UAGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 2023 0.66 0.798303
Target:  5'- gGCGcugcuuCGUGCUGCUCGAcggGGCGc -3'
miRNA:   3'- -CGCucuu--GCACGGCGAGCUuagCCGC- -5'
23881 5' -54.9 NC_005262.1 + 2568 0.68 0.707524
Target:  5'- cGCGAGAACGUcUCGgagaCGAGcCGGCGg -3'
miRNA:   3'- -CGCUCUUGCAcGGCga--GCUUaGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 3782 0.69 0.654096
Target:  5'- aUGAGAACGgaGCCGgUCGGAaccCGGCc -3'
miRNA:   3'- cGCUCUUGCa-CGGCgAGCUUa--GCCGc -5'
23881 5' -54.9 NC_005262.1 + 3951 0.66 0.807693
Target:  5'- cGCGAc-GCGaucGCCGUUUGAGUCGaGCa -3'
miRNA:   3'- -CGCUcuUGCa--CGGCGAGCUUAGC-CGc -5'
23881 5' -54.9 NC_005262.1 + 6133 0.74 0.347819
Target:  5'- cGCGAGAAgucgauCGUGCCGCcgaUCGAGUCGuucucgacGCGc -3'
miRNA:   3'- -CGCUCUU------GCACGGCG---AGCUUAGC--------CGC- -5'
23881 5' -54.9 NC_005262.1 + 6464 0.66 0.782933
Target:  5'- cCGGGAACGgcgcgcccagacgguUGCCgaucuGCUCGAugCGGCGc -3'
miRNA:   3'- cGCUCUUGC---------------ACGG-----CGAGCUuaGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 6950 0.68 0.704355
Target:  5'- -gGAGAggcguccggucuugACcugGUGCaGCUCGAAUCGGUGa -3'
miRNA:   3'- cgCUCU--------------UG---CACGgCGAGCUUAGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 6981 0.68 0.707524
Target:  5'- cGCGuacucaGGCGcuccaGCCGCUCGAcGUCGGCc -3'
miRNA:   3'- -CGCuc----UUGCa----CGGCGAGCU-UAGCCGc -5'
23881 5' -54.9 NC_005262.1 + 11483 0.67 0.769168
Target:  5'- cGCGAGcacAugG-GCCGCgucgcCGAGcUCGGCu -3'
miRNA:   3'- -CGCUC---UugCaCGGCGa----GCUU-AGCCGc -5'
23881 5' -54.9 NC_005262.1 + 11896 0.69 0.621724
Target:  5'- gGCGA-AGCGgucggUGCCGUUCGGcggcGUCGGCu -3'
miRNA:   3'- -CGCUcUUGC-----ACGGCGAGCU----UAGCCGc -5'
23881 5' -54.9 NC_005262.1 + 12324 0.68 0.686292
Target:  5'- uGCGGcu-CGUGCCGCagCGcg-CGGCGg -3'
miRNA:   3'- -CGCUcuuGCACGGCGa-GCuuaGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 12832 0.68 0.664861
Target:  5'- gGCGAGAACucgGCCuGCgUCGGcuucagcUCGGCGg -3'
miRNA:   3'- -CGCUCUUGca-CGG-CG-AGCUu------AGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 12916 0.67 0.75917
Target:  5'- uUGAcGAGCGcGCCGUgCGAuugcGUCGGCa -3'
miRNA:   3'- cGCU-CUUGCaCGGCGaGCU----UAGCCGc -5'
23881 5' -54.9 NC_005262.1 + 12964 0.68 0.663786
Target:  5'- cGCGGGAugccaGCGUGCCcgucuccgGCgCGAAgcgcuccaugcccUCGGCGa -3'
miRNA:   3'- -CGCUCU-----UGCACGG--------CGaGCUU-------------AGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 13434 0.68 0.707524
Target:  5'- uCGAcGAAUGcGCCGCUCGcGGUCGucGCGg -3'
miRNA:   3'- cGCU-CUUGCaCGGCGAGC-UUAGC--CGC- -5'
23881 5' -54.9 NC_005262.1 + 13533 0.68 0.686292
Target:  5'- gGCGcGGGCGcGCC-CUCGuugCGGCGg -3'
miRNA:   3'- -CGCuCUUGCaCGGcGAGCuuaGCCGC- -5'
23881 5' -54.9 NC_005262.1 + 13817 0.79 0.175958
Target:  5'- gGCGGGAGCGggcGCCGCugUCucGUCGGCGa -3'
miRNA:   3'- -CGCUCUUGCa--CGGCG--AGcuUAGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.