miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23887 3' -55 NC_005262.1 + 54573 1.11 0.000949
Target:  5'- aCUGGCGGCCGACGCCACUUUAACGACg -3'
miRNA:   3'- -GACCGCCGGCUGCGGUGAAAUUGCUG- -5'
23887 3' -55 NC_005262.1 + 17260 0.82 0.10746
Target:  5'- -cGGCGGCCGGCGCCGCgcugGGCuGCu -3'
miRNA:   3'- gaCCGCCGGCUGCGGUGaaa-UUGcUG- -5'
23887 3' -55 NC_005262.1 + 12422 0.78 0.191211
Target:  5'- -cGGCcuuGGCCGGCGUCGCg--GACGGCg -3'
miRNA:   3'- gaCCG---CCGGCUGCGGUGaaaUUGCUG- -5'
23887 3' -55 NC_005262.1 + 3292 0.78 0.196373
Target:  5'- uUGGCGGCCuGCGCCGCgcggccCGGCg -3'
miRNA:   3'- gACCGCCGGcUGCGGUGaaauu-GCUG- -5'
23887 3' -55 NC_005262.1 + 45008 0.77 0.201656
Target:  5'- -aGGCGGCgGACGCCAacac-GCGGCa -3'
miRNA:   3'- gaCCGCCGgCUGCGGUgaaauUGCUG- -5'
23887 3' -55 NC_005262.1 + 30457 0.76 0.248492
Target:  5'- -cGGCGGCaCGGUGCCGCgc-AGCGACg -3'
miRNA:   3'- gaCCGCCG-GCUGCGGUGaaaUUGCUG- -5'
23887 3' -55 NC_005262.1 + 40990 0.75 0.26825
Target:  5'- uCUGGCGG-CGGCGCuCGCUgcUGAUGGCa -3'
miRNA:   3'- -GACCGCCgGCUGCG-GUGAa-AUUGCUG- -5'
23887 3' -55 NC_005262.1 + 36726 0.75 0.275113
Target:  5'- gUGGgGGCUGGCGCCGCg--GGCG-Ca -3'
miRNA:   3'- gACCgCCGGCUGCGGUGaaaUUGCuG- -5'
23887 3' -55 NC_005262.1 + 49733 0.75 0.296542
Target:  5'- -cGGCGGCCGAaGCCGCaccgacgccGGCGGCg -3'
miRNA:   3'- gaCCGCCGGCUgCGGUGaaa------UUGCUG- -5'
23887 3' -55 NC_005262.1 + 42312 0.74 0.303967
Target:  5'- aCUGGUacgcauGGCCGAUGCCccaGCagUAGCGGCa -3'
miRNA:   3'- -GACCG------CCGGCUGCGG---UGaaAUUGCUG- -5'
23887 3' -55 NC_005262.1 + 62743 0.74 0.311535
Target:  5'- gCUGGCGGUCaGCGCCGCagcauuCGGCa -3'
miRNA:   3'- -GACCGCCGGcUGCGGUGaaauu-GCUG- -5'
23887 3' -55 NC_005262.1 + 61132 0.74 0.335092
Target:  5'- -cGGCGGCCagGACGCCGCc----CGGCg -3'
miRNA:   3'- gaCCGCCGG--CUGCGGUGaaauuGCUG- -5'
23887 3' -55 NC_005262.1 + 9377 0.73 0.359077
Target:  5'- -cGGCGGCCuGCGCCuccgcgaGCUUgcgcACGACg -3'
miRNA:   3'- gaCCGCCGGcUGCGG-------UGAAau--UGCUG- -5'
23887 3' -55 NC_005262.1 + 57494 0.73 0.368483
Target:  5'- -aGGCGGCCGGCGagCGCaagaaGGCGGCg -3'
miRNA:   3'- gaCCGCCGGCUGCg-GUGaaa--UUGCUG- -5'
23887 3' -55 NC_005262.1 + 20858 0.72 0.394983
Target:  5'- gCUGGuCGGUuaCGACGCgCGCgccgGACGACg -3'
miRNA:   3'- -GACC-GCCG--GCUGCG-GUGaaa-UUGCUG- -5'
23887 3' -55 NC_005262.1 + 27968 0.72 0.413321
Target:  5'- -cGGC-GCCGACGCCGCUc---CGGCc -3'
miRNA:   3'- gaCCGcCGGCUGCGGUGAaauuGCUG- -5'
23887 3' -55 NC_005262.1 + 58458 0.72 0.413321
Target:  5'- -aGGCGuGCgCGGCGUCACgacgucgGACGGCa -3'
miRNA:   3'- gaCCGC-CG-GCUGCGGUGaaa----UUGCUG- -5'
23887 3' -55 NC_005262.1 + 47692 0.72 0.423627
Target:  5'- -cGGCGGuCUGACGCCAagcaccgcgccgGGCGGCg -3'
miRNA:   3'- gaCCGCC-GGCUGCGGUgaaa--------UUGCUG- -5'
23887 3' -55 NC_005262.1 + 52386 0.72 0.441786
Target:  5'- -cGGCGGcCCGGCGCgGCgcggcuuCGGCg -3'
miRNA:   3'- gaCCGCC-GGCUGCGgUGaaauu--GCUG- -5'
23887 3' -55 NC_005262.1 + 61427 0.72 0.441786
Target:  5'- -cGGCGGCCGAggaauuccaCGUCGCgaagaaGGCGGCg -3'
miRNA:   3'- gaCCGCCGGCU---------GCGGUGaaa---UUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.