miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23887 3' -55 NC_005262.1 + 536 0.68 0.630457
Target:  5'- -aGGCGGCgGcUGCCACgaUGGCGcCg -3'
miRNA:   3'- gaCCGCCGgCuGCGGUGaaAUUGCuG- -5'
23887 3' -55 NC_005262.1 + 2026 0.66 0.758802
Target:  5'- gCUGGuCGGUCGGCGCgUGCU---ACGAg -3'
miRNA:   3'- -GACC-GCCGGCUGCG-GUGAaauUGCUg -5'
23887 3' -55 NC_005262.1 + 2976 0.65 0.788763
Target:  5'- -cGuaGGCCGGCGCaaACUcu-GCGACa -3'
miRNA:   3'- gaCcgCCGGCUGCGg-UGAaauUGCUG- -5'
23887 3' -55 NC_005262.1 + 3292 0.78 0.196373
Target:  5'- uUGGCGGCCuGCGCCGCgcggccCGGCg -3'
miRNA:   3'- gACCGCCGGcUGCGGUGaaauu-GCUG- -5'
23887 3' -55 NC_005262.1 + 3647 0.66 0.748544
Target:  5'- -cGGCGGCCGGguacuuCGCCcaugcCUUcgccGCGACg -3'
miRNA:   3'- gaCCGCCGGCU------GCGGu----GAAau--UGCUG- -5'
23887 3' -55 NC_005262.1 + 3669 0.7 0.543795
Target:  5'- aCUcGCGGCCGuCGCUgGCcgUGACGACg -3'
miRNA:   3'- -GAcCGCCGGCuGCGG-UGaaAUUGCUG- -5'
23887 3' -55 NC_005262.1 + 4837 0.66 0.768932
Target:  5'- -cGGCGGCCGGCugguucgacuGCUGCgcgc-CGACc -3'
miRNA:   3'- gaCCGCCGGCUG----------CGGUGaaauuGCUG- -5'
23887 3' -55 NC_005262.1 + 5173 0.68 0.630457
Target:  5'- gUGaCGGCCGGCGUCGCg--GGCG-Cg -3'
miRNA:   3'- gACcGCCGGCUGCGGUGaaaUUGCuG- -5'
23887 3' -55 NC_005262.1 + 5197 0.68 0.674102
Target:  5'- -gGcGCGGCCGGCGCgACc--GAgGGCg -3'
miRNA:   3'- gaC-CGCCGGCUGCGgUGaaaUUgCUG- -5'
23887 3' -55 NC_005262.1 + 5289 0.67 0.72769
Target:  5'- -gGGCGGUCGAcugguucagguuCGCCGCUaccagAugGAUc -3'
miRNA:   3'- gaCCGCCGGCU------------GCGGUGAaa---UugCUG- -5'
23887 3' -55 NC_005262.1 + 5585 0.7 0.501842
Target:  5'- gUGGUacGGgCGGCGCCGCUcuccgcaGGCGACg -3'
miRNA:   3'- gACCG--CCgGCUGCGGUGAaa-----UUGCUG- -5'
23887 3' -55 NC_005262.1 + 6272 0.67 0.684941
Target:  5'- cCUGaucGCGGUCGAUGCC-Cggc-GCGACg -3'
miRNA:   3'- -GAC---CGCCGGCUGCGGuGaaauUGCUG- -5'
23887 3' -55 NC_005262.1 + 6571 0.68 0.630457
Target:  5'- uUGGCGGCgcgcgucgCGAUGCCGCcgac-CGGCa -3'
miRNA:   3'- gACCGCCG--------GCUGCGGUGaaauuGCUG- -5'
23887 3' -55 NC_005262.1 + 6770 0.66 0.778922
Target:  5'- gUGGCcgGGCaCGAUGCCGaugauCUUgaagucgAACGACg -3'
miRNA:   3'- gACCG--CCG-GCUGCGGU-----GAAa------UUGCUG- -5'
23887 3' -55 NC_005262.1 + 7535 0.69 0.597702
Target:  5'- -cGGCGGCgCGuCGgCGCgcucGACGACa -3'
miRNA:   3'- gaCCGCCG-GCuGCgGUGaaa-UUGCUG- -5'
23887 3' -55 NC_005262.1 + 7651 0.66 0.77793
Target:  5'- -cGGCGG-CGACGgcuaucuCCGCg--AGCGGCa -3'
miRNA:   3'- gaCCGCCgGCUGC-------GGUGaaaUUGCUG- -5'
23887 3' -55 NC_005262.1 + 8146 0.66 0.778922
Target:  5'- -cGGCGuGCCGGacgcgGCCACgagcgcGCGGCc -3'
miRNA:   3'- gaCCGC-CGGCUg----CGGUGaaau--UGCUG- -5'
23887 3' -55 NC_005262.1 + 8318 0.68 0.652316
Target:  5'- -aGaCGGUCGACGCCcaGCUccucgAACGACa -3'
miRNA:   3'- gaCcGCCGGCUGCGG--UGAaa---UUGCUG- -5'
23887 3' -55 NC_005262.1 + 8529 0.68 0.674102
Target:  5'- --uGCGGCCGaACGCCGagugcgUGAUGAUg -3'
miRNA:   3'- gacCGCCGGC-UGCGGUgaa---AUUGCUG- -5'
23887 3' -55 NC_005262.1 + 8576 0.68 0.641391
Target:  5'- -aGcGCGGCCuGCGCgACga-AGCGACg -3'
miRNA:   3'- gaC-CGCCGGcUGCGgUGaaaUUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.