miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23887 3' -55 NC_005262.1 + 17679 0.69 0.580324
Target:  5'- gCUGGaagcggcgaagaagcCGGCCGugGUCGCUggcccgAACGAg -3'
miRNA:   3'- -GACC---------------GCCGGCugCGGUGAaa----UUGCUg -5'
23887 3' -55 NC_005262.1 + 48367 0.7 0.522656
Target:  5'- gCUGGCGGCCGGCuaucaGUCGggUU-ACGACc -3'
miRNA:   3'- -GACCGCCGGCUG-----CGGUgaAAuUGCUG- -5'
23887 3' -55 NC_005262.1 + 17396 0.7 0.52686
Target:  5'- -cGGCGGCCGACaauGCCgagacgcugggcgccACgcugGACGACc -3'
miRNA:   3'- gaCCGCCGGCUG---CGG---------------UGaaa-UUGCUG- -5'
23887 3' -55 NC_005262.1 + 3669 0.7 0.543795
Target:  5'- aCUcGCGGCCGuCGCUgGCcgUGACGACg -3'
miRNA:   3'- -GAcCGCCGGCuGCGG-UGaaAUUGCUG- -5'
23887 3' -55 NC_005262.1 + 11587 0.7 0.543795
Target:  5'- -cGGCGGCCaGCGCU-Cg--AGCGACu -3'
miRNA:   3'- gaCCGCCGGcUGCGGuGaaaUUGCUG- -5'
23887 3' -55 NC_005262.1 + 57423 0.7 0.55447
Target:  5'- -aGGCGGCCGACaaCGCUc---CGGCa -3'
miRNA:   3'- gaCCGCCGGCUGcgGUGAaauuGCUG- -5'
23887 3' -55 NC_005262.1 + 14315 0.7 0.55447
Target:  5'- -gGGCGGCgGAacCGCCGagcugGGCGGCg -3'
miRNA:   3'- gaCCGCCGgCU--GCGGUgaaa-UUGCUG- -5'
23887 3' -55 NC_005262.1 + 17928 0.7 0.55447
Target:  5'- -cGGC-GCCGACGCCA-----ACGGCg -3'
miRNA:   3'- gaCCGcCGGCUGCGGUgaaauUGCUG- -5'
23887 3' -55 NC_005262.1 + 21353 0.69 0.575995
Target:  5'- -aGGCGGCCaAgGCCGCgcgcAGCGAg -3'
miRNA:   3'- gaCCGCCGGcUgCGGUGaaa-UUGCUg -5'
23887 3' -55 NC_005262.1 + 51195 0.7 0.512205
Target:  5'- -cGGCGGCCcGCuggaGCCGCgcgGGCGAUg -3'
miRNA:   3'- gaCCGCCGGcUG----CGGUGaaaUUGCUG- -5'
23887 3' -55 NC_005262.1 + 63269 0.71 0.461368
Target:  5'- gUGGCaGCCGcCGCCuGCU-UGACGGCc -3'
miRNA:   3'- gACCGcCGGCuGCGG-UGAaAUUGCUG- -5'
23887 3' -55 NC_005262.1 + 46546 0.71 0.451519
Target:  5'- -cGGC-GCCGGcCGCCGCUcccGCGACg -3'
miRNA:   3'- gaCCGcCGGCU-GCGGUGAaauUGCUG- -5'
23887 3' -55 NC_005262.1 + 40990 0.75 0.26825
Target:  5'- uCUGGCGG-CGGCGCuCGCUgcUGAUGGCa -3'
miRNA:   3'- -GACCGCCgGCUGCG-GUGAa-AUUGCUG- -5'
23887 3' -55 NC_005262.1 + 36726 0.75 0.275113
Target:  5'- gUGGgGGCUGGCGCCGCg--GGCG-Ca -3'
miRNA:   3'- gACCgCCGGCUGCGGUGaaaUUGCuG- -5'
23887 3' -55 NC_005262.1 + 49733 0.75 0.296542
Target:  5'- -cGGCGGCCGAaGCCGCaccgacgccGGCGGCg -3'
miRNA:   3'- gaCCGCCGGCUgCGGUGaaa------UUGCUG- -5'
23887 3' -55 NC_005262.1 + 62743 0.74 0.311535
Target:  5'- gCUGGCGGUCaGCGCCGCagcauuCGGCa -3'
miRNA:   3'- -GACCGCCGGcUGCGGUGaaauu-GCUG- -5'
23887 3' -55 NC_005262.1 + 58458 0.72 0.413321
Target:  5'- -aGGCGuGCgCGGCGUCACgacgucgGACGGCa -3'
miRNA:   3'- gaCCGC-CG-GCUGCGGUGaaa----UUGCUG- -5'
23887 3' -55 NC_005262.1 + 47692 0.72 0.423627
Target:  5'- -cGGCGGuCUGACGCCAagcaccgcgccgGGCGGCg -3'
miRNA:   3'- gaCCGCC-GGCUGCGGUgaaa--------UUGCUG- -5'
23887 3' -55 NC_005262.1 + 61427 0.72 0.441786
Target:  5'- -cGGCGGCCGAggaauuccaCGUCGCgaagaaGGCGGCg -3'
miRNA:   3'- gaCCGCCGGCU---------GCGGUGaaa---UUGCUG- -5'
23887 3' -55 NC_005262.1 + 29180 0.71 0.451519
Target:  5'- -aGGCGGCCGuCGCCGagcUGAUGGa -3'
miRNA:   3'- gaCCGCCGGCuGCGGUgaaAUUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.