miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23887 5' -59.9 NC_005262.1 + 54607 1.14 0.000232
Target:  5'- aGGACGGGCUGAUCUGCGCCGACCGCCa -3'
miRNA:   3'- -CCUGCCCGACUAGACGCGGCUGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 28796 0.79 0.086388
Target:  5'- cGGACGGGCccGcgCUGCuGcCCGGCUGCCu -3'
miRNA:   3'- -CCUGCCCGa-CuaGACG-C-GGCUGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 34130 0.78 0.101598
Target:  5'- uGGGCGGGCUGcgCggGCGCgGGCgGCa -3'
miRNA:   3'- -CCUGCCCGACuaGa-CGCGgCUGgCGg -5'
23887 5' -59.9 NC_005262.1 + 16353 0.76 0.125822
Target:  5'- cGGCGcGCUGAUCgGCGCCG-CCGCg -3'
miRNA:   3'- cCUGCcCGACUAGaCGCGGCuGGCGg -5'
23887 5' -59.9 NC_005262.1 + 44178 0.76 0.132666
Target:  5'- --cCGGGCUGGa---CGCCGACCGCCa -3'
miRNA:   3'- ccuGCCCGACUagacGCGGCUGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 46725 0.75 0.147394
Target:  5'- cGACGGGCgcgccuAUCgGCGCCGugCGCg -3'
miRNA:   3'- cCUGCCCGac----UAGaCGCGGCugGCGg -5'
23887 5' -59.9 NC_005262.1 + 38955 0.74 0.16789
Target:  5'- uGGCGcaGGgUGAUCggcacgGCGCCGGCCGCg -3'
miRNA:   3'- cCUGC--CCgACUAGa-----CGCGGCUGGCGg -5'
23887 5' -59.9 NC_005262.1 + 19883 0.74 0.176782
Target:  5'- cGGcCGcGGUUGGcgCcGCGCUGACCGCCu -3'
miRNA:   3'- -CCuGC-CCGACUa-GaCGCGGCUGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 5139 0.74 0.190904
Target:  5'- cGGGCGGcGCUGAUcCUGC-UCGGCgCGCUg -3'
miRNA:   3'- -CCUGCC-CGACUA-GACGcGGCUG-GCGG- -5'
23887 5' -59.9 NC_005262.1 + 18071 0.73 0.195827
Target:  5'- cGGACGGGaugccGAaCUGCucgaucacgGCCGGCUGCCg -3'
miRNA:   3'- -CCUGCCCga---CUaGACG---------CGGCUGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 55061 0.73 0.222133
Target:  5'- cGACGGGCaugGAggaGCGCCGGCUggGCCu -3'
miRNA:   3'- cCUGCCCGa--CUagaCGCGGCUGG--CGG- -5'
23887 5' -59.9 NC_005262.1 + 58744 0.72 0.239322
Target:  5'- -cGCGGGCcugcccgccGAUCagGCGCCGGCCGgCg -3'
miRNA:   3'- ccUGCCCGa--------CUAGa-CGCGGCUGGCgG- -5'
23887 5' -59.9 NC_005262.1 + 24205 0.72 0.245293
Target:  5'- aGGCGGcaGCcgcGAcgCUGCGCCGGCaCGCCg -3'
miRNA:   3'- cCUGCC--CGa--CUa-GACGCGGCUG-GCGG- -5'
23887 5' -59.9 NC_005262.1 + 52613 0.72 0.245293
Target:  5'- cGGGCGaGCUGAagcgcaccggcUCgugGCGCgCGACCGCa -3'
miRNA:   3'- -CCUGCcCGACU-----------AGa--CGCG-GCUGGCGg -5'
23887 5' -59.9 NC_005262.1 + 58594 0.72 0.250159
Target:  5'- uGGaAUGGGCUGAUggggcgccucgaUGCGCUGcACCGUCa -3'
miRNA:   3'- -CC-UGCCCGACUAg-----------ACGCGGC-UGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 31603 0.72 0.257607
Target:  5'- aGAuCGGGUUGuuccgaccuUCUGcCGCCG-CCGCCg -3'
miRNA:   3'- cCU-GCCCGACu--------AGAC-GCGGCuGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 30679 0.72 0.257607
Target:  5'- -aGCGGacGCUGGaCgGCGCuCGACCGCCu -3'
miRNA:   3'- ccUGCC--CGACUaGaCGCG-GCUGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 16490 0.71 0.263951
Target:  5'- cGGACGaGCUGggCgagGCGCUGGgCGCUg -3'
miRNA:   3'- -CCUGCcCGACuaGa--CGCGGCUgGCGG- -5'
23887 5' -59.9 NC_005262.1 + 15883 0.71 0.269769
Target:  5'- cGAUGGcGCUGAUCcgccgcgUGCGCgCGACguggCGCCg -3'
miRNA:   3'- cCUGCC-CGACUAG-------ACGCG-GCUG----GCGG- -5'
23887 5' -59.9 NC_005262.1 + 27746 0.71 0.270421
Target:  5'- cGACGaGCUGAaggagCguggacagGCGCCGACCGUCu -3'
miRNA:   3'- cCUGCcCGACUa----Ga-------CGCGGCUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.