miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23887 5' -59.9 NC_005262.1 + 4811 0.67 0.492804
Target:  5'- cGACGGcGCggGAg--GCGUgaGGCCGCCg -3'
miRNA:   3'- cCUGCC-CGa-CUagaCGCGg-CUGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 4840 0.67 0.502628
Target:  5'- cGGCcGGCUGGUUcgacugcugcGCGCCGACCGa- -3'
miRNA:   3'- cCUGcCCGACUAGa---------CGCGGCUGGCgg -5'
23887 5' -59.9 NC_005262.1 + 4951 0.66 0.512537
Target:  5'- uGACGucGCcGAUCUGCguGCCGAagCGCCg -3'
miRNA:   3'- cCUGCc-CGaCUAGACG--CGGCUg-GCGG- -5'
23887 5' -59.9 NC_005262.1 + 5132 0.71 0.277019
Target:  5'- cGGGCucGGGCuUGAUCguagaacucgcGCGcCCGGCCGCUc -3'
miRNA:   3'- -CCUG--CCCG-ACUAGa----------CGC-GGCUGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 5139 0.74 0.190904
Target:  5'- cGGGCGGcGCUGAUcCUGC-UCGGCgCGCUg -3'
miRNA:   3'- -CCUGCC-CGACUA-GACGcGGCUG-GCGG- -5'
23887 5' -59.9 NC_005262.1 + 5392 0.68 0.400104
Target:  5'- -cACGGGCUGuug-GCGCCuuCCGCg -3'
miRNA:   3'- ccUGCCCGACuagaCGCGGcuGGCGg -5'
23887 5' -59.9 NC_005262.1 + 5767 0.67 0.473428
Target:  5'- aGGACGGucCUGcccuugCUGCGCUGuACuCGCCc -3'
miRNA:   3'- -CCUGCCc-GACua----GACGCGGC-UG-GCGG- -5'
23887 5' -59.9 NC_005262.1 + 6368 0.69 0.391457
Target:  5'- cGGACGGuGCcgGAgcguUGUCGGCCGCCu -3'
miRNA:   3'- -CCUGCC-CGa-CUagacGCGGCUGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 6644 0.66 0.542718
Target:  5'- cGGCGGcGCUucGAUC-GCGUCG-CCGUCc -3'
miRNA:   3'- cCUGCC-CGA--CUAGaCGCGGCuGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 7713 0.69 0.391457
Target:  5'- --uCGaGCUGcAUCUuGCGCUGACCGCUc -3'
miRNA:   3'- ccuGCcCGAC-UAGA-CGCGGCUGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 9935 0.66 0.55189
Target:  5'- cGGCcGGCUugagcgcGAUCUGCuuGCCGuCCGCg -3'
miRNA:   3'- cCUGcCCGA-------CUAGACG--CGGCuGGCGg -5'
23887 5' -59.9 NC_005262.1 + 10060 0.68 0.42676
Target:  5'- gGGuCGGGUUGAagUC-GCGuUCGAgCGCCa -3'
miRNA:   3'- -CCuGCCCGACU--AGaCGC-GGCUgGCGG- -5'
23887 5' -59.9 NC_005262.1 + 10639 0.68 0.425855
Target:  5'- aGGGCGGGU-------UGCCGAUCGCCg -3'
miRNA:   3'- -CCUGCCCGacuagacGCGGCUGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 12564 0.67 0.492804
Target:  5'- cGGCGGcGCUcgucGAgCUGCuGCUG-CCGCCg -3'
miRNA:   3'- cCUGCC-CGA----CUaGACG-CGGCuGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 13397 0.66 0.532587
Target:  5'- -cGCGGcGCUGAUCgccGCGCgGuucgcgUCGCCa -3'
miRNA:   3'- ccUGCC-CGACUAGa--CGCGgCu-----GGCGG- -5'
23887 5' -59.9 NC_005262.1 + 13480 0.69 0.3804
Target:  5'- cGGCGGGCg---CUGCgGCCGGCUccucaauccgcgcgGCCg -3'
miRNA:   3'- cCUGCCCGacuaGACG-CGGCUGG--------------CGG- -5'
23887 5' -59.9 NC_005262.1 + 13520 0.67 0.502628
Target:  5'- -cACGGGCUcGGcCgGCGCgGGCgCGCCc -3'
miRNA:   3'- ccUGCCCGA-CUaGaCGCGgCUG-GCGG- -5'
23887 5' -59.9 NC_005262.1 + 13930 0.69 0.391457
Target:  5'- cGGCcGGCUGAgCUGCuuCCGguACCGCCg -3'
miRNA:   3'- cCUGcCCGACUaGACGc-GGC--UGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 15113 0.66 0.542718
Target:  5'- cGGCGuccGGCUGGaacGCGCUGGCCGgCa -3'
miRNA:   3'- cCUGC---CCGACUagaCGCGGCUGGCgG- -5'
23887 5' -59.9 NC_005262.1 + 15416 0.66 0.563162
Target:  5'- aGGCGcGGUcguaacccGA-CUGauaGCCGGCCGCCa -3'
miRNA:   3'- cCUGC-CCGa-------CUaGACg--CGGCUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.