miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23887 5' -59.9 NC_005262.1 + 50145 0.69 0.391457
Target:  5'- uGGAgCGaGcCUGAgCUGCG-CGACCGCCu -3'
miRNA:   3'- -CCU-GCcC-GACUaGACGCgGCUGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 24709 0.7 0.334441
Target:  5'- cGGACaccaccgaGGaGCUGAUC-GCGCUGGCgCGCg -3'
miRNA:   3'- -CCUG--------CC-CGACUAGaCGCGGCUG-GCGg -5'
23887 5' -59.9 NC_005262.1 + 35829 0.69 0.358113
Target:  5'- uGGGcCGGaGCggcGUCgGCGCCGcgACCGCCc -3'
miRNA:   3'- -CCU-GCC-CGac-UAGaCGCGGC--UGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 60501 0.69 0.358113
Target:  5'- cGcCGGGCcGcgCgGCGCaGGCCGCCa -3'
miRNA:   3'- cCuGCCCGaCuaGaCGCGgCUGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 56971 0.69 0.36626
Target:  5'- -cGCGGGCgUGGUCgGCaa-GACCGCCu -3'
miRNA:   3'- ccUGCCCG-ACUAGaCGcggCUGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 50074 0.69 0.374534
Target:  5'- aGACGaaGGCcg--CUGCGCCGACCGaacCCg -3'
miRNA:   3'- cCUGC--CCGacuaGACGCGGCUGGC---GG- -5'
23887 5' -59.9 NC_005262.1 + 43804 0.69 0.374534
Target:  5'- aGGAgcuuuCGGGC-GAUCgcgGCGacaCGGCCGCg -3'
miRNA:   3'- -CCU-----GCCCGaCUAGa--CGCg--GCUGGCGg -5'
23887 5' -59.9 NC_005262.1 + 32652 0.69 0.3804
Target:  5'- -cGCGGGCgaucaGGUCUgcgaacGCuucgaguucgcgcuGCCGGCCGCCg -3'
miRNA:   3'- ccUGCCCGa----CUAGA------CG--------------CGGCUGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 7713 0.69 0.391457
Target:  5'- --uCGaGCUGcAUCUuGCGCUGACCGCUc -3'
miRNA:   3'- ccuGCcCGAC-UAGA-CGCGGCUGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 42976 0.7 0.334441
Target:  5'- cGACuGGCUGAaaaCcGCGCCGgGCCGCUu -3'
miRNA:   3'- cCUGcCCGACUa--GaCGCGGC-UGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 51264 0.71 0.270421
Target:  5'- aGGACGGcaaGCUGAaccUCaccgGcCGCCGGCUGCUg -3'
miRNA:   3'- -CCUGCC---CGACU---AGa---C-GCGGCUGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 27746 0.71 0.270421
Target:  5'- cGACGaGCUGAaggagCguggacagGCGCCGACCGUCu -3'
miRNA:   3'- cCUGCcCGACUa----Ga-------CGCGGCUGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 5139 0.74 0.190904
Target:  5'- cGGGCGGcGCUGAUcCUGC-UCGGCgCGCUg -3'
miRNA:   3'- -CCUGCC-CGACUA-GACGcGGCUG-GCGG- -5'
23887 5' -59.9 NC_005262.1 + 55061 0.73 0.222133
Target:  5'- cGACGGGCaugGAggaGCGCCGGCUggGCCu -3'
miRNA:   3'- cCUGCCCGa--CUagaCGCGGCUGG--CGG- -5'
23887 5' -59.9 NC_005262.1 + 24205 0.72 0.245293
Target:  5'- aGGCGGcaGCcgcGAcgCUGCGCCGGCaCGCCg -3'
miRNA:   3'- cCUGCC--CGa--CUa-GACGCGGCUG-GCGG- -5'
23887 5' -59.9 NC_005262.1 + 52613 0.72 0.245293
Target:  5'- cGGGCGaGCUGAagcgcaccggcUCgugGCGCgCGACCGCa -3'
miRNA:   3'- -CCUGCcCGACU-----------AGa--CGCG-GCUGGCGg -5'
23887 5' -59.9 NC_005262.1 + 58594 0.72 0.250159
Target:  5'- uGGaAUGGGCUGAUggggcgccucgaUGCGCUGcACCGUCa -3'
miRNA:   3'- -CC-UGCCCGACUAg-----------ACGCGGC-UGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 30679 0.72 0.257607
Target:  5'- -aGCGGacGCUGGaCgGCGCuCGACCGCCu -3'
miRNA:   3'- ccUGCC--CGACUaGaCGCG-GCUGGCGG- -5'
23887 5' -59.9 NC_005262.1 + 16490 0.71 0.263951
Target:  5'- cGGACGaGCUGggCgagGCGCUGGgCGCUg -3'
miRNA:   3'- -CCUGCcCGACuaGa--CGCGGCUgGCGG- -5'
23887 5' -59.9 NC_005262.1 + 15883 0.71 0.269769
Target:  5'- cGAUGGcGCUGAUCcgccgcgUGCGCgCGACguggCGCCg -3'
miRNA:   3'- cCUGCC-CGACUAG-------ACGCG-GCUG----GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.